Table 4 Performance effect of kernel shared memory.
From: Accelerating next generation sequencing data analysis with system level optimizations
Kernel shared memory size | HaplotypeCaller execution time for GATK 3.3 (in Hours) | HaplotypeCaller execution time for GATK 3.7 (in Hours) |
|---|---|---|
4 GB | 4.36 | 1.39 |
8 GB | 3.01 | 1.39 |
64 GB | 2.84 | 1.18 |
128 GB | 2.51 | 1.14 |
