Table 2 The SNPs associated with female fertility traits detected by validating candidate SNPs from Chinese Holsteins using Nordic Holstein data.

3

16,179,998

rs109155222

IFLc

0.40

4.33E-03

1.75

0.43

3.41E-05

0.30

IL6R

3

25,763,148

rs110094798

IFLc

0.24

3.30E-03

1.95

0.20

3.12E-05

0.35

FAM46C, MAN1A2

3

26,949,196

rs109368837

IFLc

0.22

2.78E-03

2.09

0.20

7.67E-05

0.31

CD58, ATP1A1

3

66,768,945

rs42361598

IFLc

0.42

3.94E-03

1.69

0.44

4.85E-05

0.31

PTGFR, GIPC2

4

47,737,653

rs110127380

CRh

0.47

4.40E-03

3.69

0.41

7.90E-05

0.37

NAMPT, PIK3CG

4

67,145,895

rs41589544

ICF

0.07

1.51E-04

0.85

0.12

5.19E-05

0.21

CHN2

6

87,600,892

rs109377247

IFLc

0.33

6.51E-04

2.31

0.33

8.67E-06

0.35

ENSBTAG00000007816, AMTN

10

29,538,245

rs42563243

ICF

0.44

2.62E-03

0.65

0.38

4.01E-05

0.32

ENSBTAG00000021414 ENSBTAG00000025634

10

83,435,322

rs43642952

CRc

0.16

3.07E-03

1.56

0.18

1.41E-05

0.29

ENSBTAG00000005395, ENSBTAG00000025385

11

83,938,054

rs29026760

ICF

0.26

3.70E-03

0.62

0.28

5.08E-05

0.28

FAM84A, ENSBTAG00000019284

11

85,906,433

rs110195627

ICF

0.23

2.90E-03

0.66

0.26

1.35E-05

0.31

TRIB2, LPIN1

13

30,713,329

rs109193608

IFLc

0.35

2.68E-03

1.89

0.42

7.55E-06

0.33

FAM188A, PTER

13

31,364,982

rs110068451

ICF, IFLc

0.34

3.44E-03, 9.21E-04

0.58, 2.18

0.41

6.70E-11, 1.33E-06

0.69, 1.12

RSU1

13

31,416,451

rs109492780

IFLc

0.38

5.90E-04

2.53

0.43

8.11E-09

0.56

RSU1

13

31,524,626

rs41604666

IFLc

0.49

4.41E-04

2.64

0.48

4.37E-07

0.46

RSU1

13

32,802,426

rs41609782

IFLc

0.40

3.26E-03

1.82

0.41

1.69E-05

0.31

SLC39 A12, CACNB2

13

32,831,454

rs109983109

ICF, IFLc

0.41

8.03E-04, 3.11E-03

0.81, 1.86

0.45

6.64E-10, 4.95E-06

0.66, 0.34

SLC39A12, CACNB2

13

33,501,056

rs109621404

IFLc

0.46

3.90E-03

1.95

0.40

1.65E-08

0.60

EPC1

13

52,447,531

rs109573317

CRc

0.35

4.58E-03

1.37

0.30

4.07E-05

0.29

SLC4A11

15

27,235,378

rs110869861

ICF

0.27

4.94E-03

0.50

0.23

9.02E-06

0.42

CADM1, BUD13

16

53,070,045

rs41580862

ICF

0.27

4.14E-04

0.84

0.26

8.50E-05

0.30

SLC25A34

16

53,097,936

rs110199510

ICF

0.27

5.89E-04

0.79

0.26

8.50E-05

0.30

PLEKHM2

16

57,419,757

rs41581444

ICF

0.31

5.01E-04

0.87

0.36

3.89E-05

0.30

ENSBTAG00000027809, GPR52

17

67,245,920

rs41848120

CRh

0.48

1.28E-04

7.32

0.46

3.87E-05

0.41

PIWIL3

17

72,448,619

rs41634418

ICF

0.35

3.57E-03

0.59

0.34

5.79E-06

0.40

PISD

18

48,150,900

rs110543856

ICF, IFLc

0.15

2.60E-03, 2.99E-04

0.65, 2.80

0.13

5.84E-08, 3.96E-07

0.61, 0.50

SIPA1L3

21

41,383,298

rs29012716

ICF

0.16

4.96E-04

0.81

0.12

5.23E-05

0.40

PRKD1, G2E3

21

47,273,394

rs110964123

ICF

0.40

2.13E-03

0.63

0.38

7.52E-05

0.30

NKX2-8, PAX9

23

50,036,208

rs110076231

CRc

0.38

1.27E-03

1.95

0.45

1.31E-04

0.25

PRPF4B, PXDC1

23

51,938,161

rs29027634

IFLc, CRc

0.36

3.25E-03, 4.73E-03

1.84, 1.45

0.37

8.89E-05,1.26E-04

0.27, 0.26

EXOC2

24

30,468,614

rs109722348

ICF

0.39

2.98E-03

0.66

0.38

6.27E-05

0.31

AQP4, KCTD1

24

30,513,490

rs110839120

ICF

0.39

2.65E-03

0.68

0.38

1.07E-04

0.28

AQP4, KCTD1

24

33,624,891

rs109629413

ICF

0.48

2.35E-03

0.62

0.47

7.81E-05

0.30

TMEM241