Table 2 List of outlier loci selected from BLASTn results together with alignment information: locus name, genetic differentiation (F ST), BLASTn top hit, sequence coverage (%) and e-value.

From: Genomic signatures of local adaptation reveal source-sink dynamics in a high gene flow fish species

Locus

F ST

BLASTn Top Hit

Coverage (%)

E-value

Function

Reference

TP581

0.284

Thamnophis sirtalis: acetylserotonin O-methyltransferase-like (ASMTL)

98

2.14 * 10−18

Synthesis of melatonin

86

TP2626

0.423

Labrus bergylta: seizure threshold 2 homolog (mouse) (szt2)

100

5.96 * 10−19

Nervous system

87

TP10437

0.123

Larimichthys crocea: putative sodium-coupled neutral amino acid transporter 8

100

1.66 * 10−19

Membrane transport & signals

88

TP16126

0.178

Takifugu rubripes: erythrocyte band 7 integral membrane protein-like

100

5.96 * 10−19

Membrane transport & signals

89

TP33552

0.070

Austrofundulus limnaeus: Rho guanine nucleotide exchange factor (GEF) 37 (arhgef37)

80.5

2.81 * 10−12

Membrane transport & signals

90

TP42559

0.123

Stegastes partitus: phosphatidylinositol-4-phosphate 5-kinase, type I, beta (pip5k1b)

95

2.77 * 10−17

Growth & metabolism

47

TP55758

0.105

Monopterus albus: HECT domain E3 ubiquitin protein ligase 1 (hectd1)

80.5

2.81 * 10−12

Membrane transport & signals

91

TP73052

0.070

Stegastes partitus: early endosome antigen 1 (eea1)

100

1.29 * 10−15

Waste storage regulation

92

TP86444

0.132

Labrus bergylta: protein kinase C-binding protein NELL1-like

100

1.28 * 10−20

Growth & metabolism

46

TP98903

0.188

Lates calcarifer: uncharacterized LOC108874954)

100

2.77 * 10−17

—

 

TP109927

0.204

Labrus bergylta: myelin transcription factor 1 like (myt1l)

96

7.76 * 10−13

Nervous system

93

TP118519

0.182

Labrus bergylta: multiple EGF like domains 10 (megf10)

100

1.28 * 10−20

Muscle growth

94

TP133930

0.132

Fundulus heteroclitus: collagen and calcium-binding EGF domain-containing protein 1-like

85

2.79 * 10−12

Embryogenesis

95

TP137584

0.070

Lates calcarifer: metastasis suppressor protein 1-like

78

1.67 * 10−14

Growth & metabolism

45

  1. Also shown is the physiological function associated with each top hit and a reference. Only top hits with ≥50% coverage and ≤e−10 were selected during BLASTn. Bold typeface indicates outlier loci that were identified via LOSITAN, BAYESCAN and BAYESCENV methods.
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