Figure 9
From: De novo transcriptome assembly for the spiny mouse (Acomys cahirinus)
Unique BLAST hits for each assembly when aligned to: (A) Mus musculus RefSeq transcript database (e-value ≤ 1 × 10−20), (B) UniProtKB/SwissProt database (e-value ≤ 1 × 10−5), (C) UniProtKB/SwissProt database (e-value ≤ 1 × 10−20). SOAPdenovo-Trans (1): no filtering; (2): light filtering of poor quality read pairs, combined with in silico normalization; (3): moderate filtering of poor quality read pairs; Trinity (1): light filtering of poor quality read pairs, combined with in silico normalization; (2): moderate filtering of poor quality read pairs; (3): light filtering of poor quality read pairs, combined with SEECER error correction; (4) Trinity v2.3.2 after moderate filtering of poor quality read pairs; tr2aacds merged assemblies (v1): pre-v2.3.2 Trinity; (v2) including v2.3.2 Trinity output.
