Table 1 Summary of single-trait genome-wide studies (GWAS) results for raw traits, principal components (PCs) and Choleskey transformed traits (CTs).

From: Genome-wide comparative analyses of correlated and uncorrelated phenotypes identify major pleiotropic variants in dairy cattle

Raw traits	Full names	trait type	¹SNPs	h²	se	PC	Eigenvalues	Vp²	¹SNPs	h²	se	CT	¹SNPs	h²	se
01.Prot	protein yield	production	119	0.86	0.02	PC1	6.355	0.254	5	0.67	0.03	01.Prot	119	0.86	0.02
02.Fat	fat yield	production	178	0.82	0.02	PC2	2.504	0.100	3	0.61	0.03	02.Fat	408	0.85	0.02
03.Milk	milk yield	production	230	0.86	0.02	PC3	2.123	0.085	21	0.53	0.03	03.Milk	344	0.90	0.01
04.SCC	somatic cell count	production	8	0.82	0.02	PC4	1.758	0.070	26	0.65	0.03	04.SCC	8	0.82	0.02
05.SurvDi	survival	reproduction	27	0.53	0.03	PC5	1.459	0.058	3	0.55	0.03	05.SurvDi	14	0.45	0.03
06.Fert	fertility	reproduction	31	0.54	0.03	PC6	1.145	0.046	25	0.56	0.04	06.Fert	6	0.43	0.03
07.Temp	temperament	management	6	0.50	0.03	PC7	1.004	0.040	9	0.49	0.03	07.Temp	49	0.47	0.03
08.MSpeed	milking speed	management	13	0.57	0.03	PC8	0.910	0.036	28	0.57	0.03	08.MSpeed	10	0.54	0.03
09.Stat	stature	linear type	19	0.64	0.03	PC9	0.881	0.035	6	0.57	0.04	09.Stat	25	0.63	0.03
10.Like	likeability	management	4	0.48	0.03	PC10	0.809	0.032	44	0.57	0.03	10.Like	1	0.16	0.03
11.Angul	angularity	linear type	1	0.37	0.04	PC11	0.741	0.030	14	0.43	0.04	11.Angul	1	0.24	0.03
11.Bone	bone quality	linear type	6	0.49	0.03	PC12	0.718	0.029	8	0.52	0.03	11.Bone	5	0.41	0.04
11.CentL	central ligament	linear type	5	0.47	0.03	PC13	0.611	0.024	43	0.41	0.04	11.CentL	6	0.36	0.04
11.ChestW	chest width	linear type	9	0.49	0.03	PC14	0.584	0.023	1	0.52	0.03	11.ChestW	15	0.36	0.03
11.ForeA	fore attachment	linear type	3	0.47	0.04	PC15	0.486	0.019	42	0.44	0.04	11.ForeA	2	0.36	0.04
11.MuzW	muzzle width	linear type	16	0.43	0.03	PC16	0.444	0.018	6	0.38	0.03	11.MuzW	7	0.33	0.03
11.PinSet	pin set	linear type	12	0.62	0.03	PC17	0.437	0.017	42	0.37	0.03	11.PinSet	14	0.58	0.04
11.PinW	pin width	linear type	9	0.56	0.03	PC18	0.416	0.017	241	0.53	0.03	11.PinW	5	0.48	0.03
11.RSet	rear legs set	linear type	15	0.35	0.04	PC19	0.356	0.014	129	0.31	0.03	11.RSet	4	0.33	0.03
11.RearAH	rear attachment height	linear type	12	0.62	0.03	PC20	0.330	0.013	3	0.22	0.03	11.RearAH	4	0.47	0.04
11.RearAW	rear attachment width	linear type	12	0.51	0.03	PC21	0.272	0.011	6	0.27	0.03	11.RearAW	1	0.37	0.04
11.TeatPF	front teat placement	linear type	1	0.69	0.03	PC22	0.252	0.010	2	0.09	0.03	11.TeatPF	4	0.57	0.03
11.UdTex	udder texture	linear type	4	0.41	0.03	PC23	0.195	0.008	3	0.12	0.03	11.UdTex	0	0.08	0.03
24.OType	overall type	linear type	5	0.49	0.03	PC24	0.140	0.006	44	0.35	0.03	24.OType	5	0.16	0.03
25.Mamm	mammary system	linear type	7	0.50	0.03	PC25	0.070	0.003	153	0.77	0.02	25.Mamm	13	0.31	0.03

¹The number of SNPs with single-trait GWAS P < 1 × 10⁻⁵. ²Total phenotypic variances explained by each principal component.

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Table 1 Summary of single-trait genome-wide studies (GWAS) results for raw traits, principal components (PCs) and Choleskey transformed traits (CTs).

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