Table 1 Characteristics of SLAF-seq among Landrace, Erhualian, and Meishan.
Item | Landrace | Erhualian | Meishan | Average of individuals | Oryza sativa indica |
|---|---|---|---|---|---|
Statistics of reads | |||||
Q30 percentage (%) | 83.26–87.40 | 87.03–89.21 | 87.51–89.89 | 87.67 | 88.24 |
GC percentage (%) | 42.93–46.89 | 44.26–46.76 | 42.74–45.32 | 44.55 | 42.48 |
Number of reads | 7,314,304–11,830,078 | 2,572,513–5,014,955 | 3,151,950–5,353,332 | 5,601,972 | 1,452,138 |
Average of reads | 9,038,472 | 3,601,484 | 3,964,589 | — | — |
Statistics of SLAFs | |||||
Number of SLAFs | 352,574–420,742 | 316,233–382,547 | 349,762–389,120 | 371,217 | — |
Average of SLAFs | 398,034 | 344,471 | 369,160 | — | — |
Average depth | 12.74 | 6.10 | 6.13 | — | — |
Statistics of SNPs | |||||
Number of SNPs | 1,615,995–2,604,078 | 1,160,477–1,663,707 | 1,322,101–1,701,153 | 1,680,561 | — |
Heterozygosity (%) | 4.81–8.12 | 5.81–8.45 | 5.20–7.23 | 6.51 | — |
Ratio of Integrity (%) | 30.07–48.45 | 21.59–30.95 | 24.60–31.65 | 31.26 | — |
Average of SNPs | 2,176,131 | 1,302,927 | 1,530,285 | — | — |
