Table 3 Differential methylation of the nineteen DMGRs identified

From: Deconvolution of DNA methylation identifies differentially methylated gene regions on 1p36 across breast cancer subtypes

DMGR

Basal-like

Her2

Luminal A

Luminal B

AGRN Body

+

+

+

+

C1orf170 Body

−

+

−+

−

C1orf170 TSS1500

−

+

−

−

FAM41C Body

−

−

−

−

FAM41C TSS1500

+

+

+

+

FLJ39609 TSS200

−

−

−

−

HES4 TSS1500

− +

−

+

−

ISG15 Body

−

−

+

−

KLHL17 3′UTR

−+

+

+

−+

KLHL17 Body

−

+

+

+

NOC2L Body

−

+

+

+

PLEKHN1 3′UTR

+

+

+

+

PLEKHN1 Body

+

+

+

+

PLEKHN1 TSS1500

−+

+

+

+

PLEKHN1 TSS200

−

−

−

−

SAMD11 5′UTR

+

+

+

+

SAMD11 Body

+

+

+

+

SAMD11 TSS1500

+

+

+

+

WASH5P Body

−

−

−

−

  1. (−+) DMGRs with both hypo- and hyper-methylated CpGs.
  2. (−) Hypo-methylated.
  3. (+) Hyper-methylated.