Table 3 Functions of candidate genes associated with three derived germination traits.
Trait | SNP | Gene*# | Location | Distance (kb) | LD | Gene function |
|---|---|---|---|---|---|---|
RGI | S1_258878734 | GRMZM2G704005# | exon | 0 | 1 | Lactoylglutathione lyase |
RGR | S1_296660959 | GRMZM2G113158 | exon | 0 | 1 | G-type lectin s-receptor-like serine threonine-protein kinase at1g34300 |
RDT50 | S2_117871531 | GRMZM2G318156# | exon | 1.08 | 0.82 | Uncharacterized protein LOC100502242 |
RDT50 | S2_117871531 | GRMZM2G012148*# | exon | 47.62 | 0.8 | Non-specific lipid-transfer protein at2g13820 |
RDT50 | S2_117871531 | GRMZM2G300994# | exon | −98.86 | 0.88 | Gnat transcription partial |
RDT50 | S2_117871531 | GRMZM5G871707# | exon | 1.08 | 0.82 | Uncharacterized protein LOC100502242 |
RGR | S2_154533439 | GRMZM2G462797# | intron | 0 | 1 | TPA: hypothetical protein ZEAMMB73_597353 |
RGI | S4_238122472 | GRMZM2G389768* | exon | 0 | 1 | Glycine-rich protein 2 |
RGR | S6_156520680 | GRMZM2G073535# | exon | 0 | 1 | Protein translation factor sui1 |
RGR | S6_156520680 | GRMZM5G802338# | exon | 0.03 | 1 | protein translation factor sui1 |
RGI | S6_23724609 | GRMZM2G057186* | exon | 0 | 1 | Gdp-l-galactose phosphorylase 2-like |
RGI | S6_23724609 | GRMZM2G081928 | exon | −199.88 | 0.84 | Peroxidase |
RDT50 | S7_134104928 | GRMZM2G033884 | exon | −0.07 | 1 | Pentatricopeptide repeat-containing protein mitochondrial |
RDT50 | S7_1956860 | GRMZM2G019746 | exon | 0 | 1 | AMP-dependent synthetase and ligase |
RGR | S9_128655946 | GRMZM2G170890 | exon | −0.2 | 0.88 | Mitochondrial fission 1 protein a-like |
RDT50/RGI | ss196436428 | GRMZM2G178486*# | exon | 248.98 | 0.81 | Zinc finger proteins: C3HC4-type family proteins |
RDT50/RGI | ss196436428 | GRMZM5G806387*# | exon | −366.49 | 0.8 | Casp-like protein 2a1 |
RDT50/RGI | ss196436428 | GRMZM2G148793# | intron | −216.19 | 0.86 | TPA: hypothetical protein ZEAMMB73_617749 |
