Table 2 Summary of data matrices produced through Stacks pipeline.
Matrix* | missing data | SNPs | informative SNPs | total loci | consensus loci | polymorphic loci | |
|---|---|---|---|---|---|---|---|
m = 5 | s55 | 0 | 0 | 0 | 2 | 2 | 0 |
s45 | 13.59% | 97 | 46 | 119 | 68 | 51 | |
s35 | 29.29% | 911 | 241 | 456 | 149 | 307 | |
s25 | 50.14% | 20855 | 6485 | 4651 | 319 | 4332 | |
s20 | 57.86% | 67263 | 21357 | 13889 | 538 | 13351 | |
s15 | 65.22% | 167674 | 53927 | 33678 | 1082 | 32596 | |
s10 | 72.64% | 362823 | 119331 | 74448 | 2856 | 71592 | |
m = 10 | s55 | 1.79% | 9 | 6 | 10 | 6 | 4 |
s45 | 10.78% | 208 | 90 | 245 | 132 | 113 | |
s35 | 24.31% | 537 | 182 | 433 | 192 | 241 | |
s25 | 44.50% | 2589 | 777 | 1365 | 381 | 984 | |
s20 | 54.52% | 6356 | 1957 | 2780 | 639 | 2141 | |
s15 | 63.65% | 15202 | 4942 | 5665 | 1069 | 4596 | |
s10 | 73.87% | 42788 | 14194 | 14097 | 2198 | 11899 | |
