Table 2 Evaluation of SecA Solution Dimers.
Organism | Structure | R G(Å) | aSAXSχ | N-term in Interface | bFRET χ2 value | Reference and Comments |
|---|---|---|---|---|---|---|
B. subtilis | 1M6N | 38.1 | 25.5 | Yes | 1.1 | Hunt et al.28 |
E. coli | 1M6N (E. coli model) | 39.8 | 17.6 | Yes | 1.1 | SecA-N68 used to model E. coli protomer structure; 1M6N dimer interface |
B. subtilis | 2IBM | 39.5 | 44.7 | No | 6.2 | Zimmer et al.68 |
B. subtilis | 3JV2 | 45.4 | 36.4 | No | — | Zimmer and Rapoport, 2009 |
M. tuberculosis SecA1 | 1NKT AB dimer | 46.3 | 50.5 | No | 6.7 | Sharma et al.63 |
M. tuberculosis SecA1 | 1NKT AC dimer | 39.8 | 31.9 | (Yes)c | — | Sharma et al.63; similar arrangement to 1M6N dimer |
T. thermophilus | 2IPC | 44.7 | 34.3 | Yes | 4.7 | Vassylyev et al.64; parallel dimer |
E. coli | 2FSF | 42.9 | 16.1 | No | 6.9 | Papanikolau et al.34; PPXD from SecA-N68∆NC added to structure |
B. subtilis | 3JV2 SAXS-based Model | 36.9 | 10.3 | Yes | — | 3JV2 protomer conformation (Zimmer and Rapoport)48; new dimer structure found using SAXS |
E. coli | 3JV2 SAXS-based Model | 38.0 | 10.6 | Yes | 2.8 | SecA-N68 and 3JV2 CT domains used to model E. coli protomer structure; SAXS-based dimer interface. |