Table 1 Origin, resistance properties and molecular typing of OXA-48 β-Lactamase Escherichia coli isolates from a Spanish hospital.

From: Whole genome sequencing, molecular typing and in vivo virulence of OXA-48-producing Escherichia coli isolates including ST131 H30-Rx, H22 and H41 subclones

Isolate

Year of isolation

Patient Sexa/ageb

Originc

Sample

Resistance phenotyped/genese

ERT/IPM/MER MIC

Serotype

MLSTf

fimH allele

Virotypeg

Phylogroup

Ec-HUCA 1h

2012

F/46

GSU

Surgical wound

AMP, AMC, ETP, IPMI, ERYi, NAL, TET/bla TEM-1b , bla OXA-48, mph (A), gyrA-S83L, tet (B)

2/2/0.19

O16:H5

ST131/PST506

H41

nt

B2

Ec-HUCA 2h

2012

M/57

ICU

Surgical wound

AMP, AMC, CTX, ETP, IMPI, [AMKI, GEN, TOB], KAN, STR, ERYi, SUL, TMP, SXT,TET/bla TEM-1b , bla OXA-30 , bla CTX-M-15 , bla OXA-48, aph (3′)-Ia, aadA1, strB, mph (A), sul1, dfrA5, tet (A)

2/2/0.125

O9:H25

ST58/PST24

H27

na

B1

Ec-HUCA 3h

2012

M/68

RU

Urine

AMP, AMC, ETP, IMPI/ampC2, ampH, bla OXA-48

2/2/0.38

O25:H5

ST83/PST207

H21

na

B2

Ec-HUCA 4

2014

M/45

ICU

Surgical wound

AMP, AMC, FOX, ETP, IPMI, MER, CHL, NAL, SUL, TMP, SXT, TET/bla TEM-1c , bla OXA-48, cmlA1, gyrA-S83L, sul3, tet (A)

4/2/3

O25:H4

ST131/PST9

H22

D5

B2

Ec-HUCA 5

2015

F/79

PCC

Urine

AMP, AMC, FOX, CTX, ETP, NAL, CIP, SXT/bla CTX-M-15, bla OXA-48, gyrA-S83L + D87N, parC-S80I + E84V, folA-W30R

2/0.5/0.38

O25:H4

ST131/PST43

H30

E

B2

Ec-HUCA 6

2015

M/80

EU

Urine

AMP, AMC, FOX, CTX, ETP, CHL, NAL, CIP, SXT, TMP/bla CTX-M-15, bla OXA-48, gyrA-S83L + D87N, parC-S80I + E84V, qnrS1, dfrA14

2/0.5/0.38

O25:H4

ST131/PST43

H30

E

B2

Ec-HUCA 7

2015

F/86

GU

Urine

AMP, AMC, FOX, CTX, ETP, CHL, NAL, CIP, SXT, TMP/bla CTX-M-15 , bla OXA-48, gyrA-S83L + D87N, parC-S80I + E84V; parE-I529L, qnrS1, dfrA14

2/0.5/0.38

O25:H4

ST131/PST43

H30

E

B2

  1. aF, female; M, male. byears old. cGSU, general surgery unit-HUCA; ICU, intensive care unit-HUCA; RU, reanimation unit-HUCA; PCC, primary-care center; EU, emergency unit-HUCA; GU, geriatric unit of a long-term care facility; HUCA, Hospital Universitario Central de Asturias. dAMP, ampicillin; AMC, amoxicillin-clavulanic acid; FOX, cefoxitin; CTX, cefotaxime; ETP, ertapenem; IMP, imipenem; MER, meropenem; CHL, chloramphenicol, AMK, amikacin; GEN, gentamicin; KAN, kanamycin; TOB, tobramycin; STR, streptomycin, ERY, erythromycin; NAL, nalidixic acid; CIP, ciprofloxacin; SUL, sulfonamides; TMP, trimethoprim; SXT, trimethoprim-sulfamethoxazole; TET, tetracycline; I, intermediate resistance. eAll resistance genes were in silico determined; bla CTX-M-15 and bla OXA-48 were also experimentally detected by PCR amplification. Plasmid genes are underlined (see Table 2 for details). fST, sequence type according to Achtman; PST, sequence type according to the Pasteur Institute. gThe virotype was determined by PCR based on the presence or absence of 13 virulence genes33; nt, not typeable; na, not applicable. hIsolates partially characterized in a previous study15. iMIC of erythromycin: 256 µg/ml, higher than that obtained for isolates lacking mph(A): 128 µg/ml (Ec-HUCA 3, Ec-HUCA 5, Ec-HUCA 6, Ec-HUCA 7) or 64 µg/ml (Ec-HUCA 4).