Table 1 Genes identified in the chloroplast genome of Arachis species.

Photosynthesis related genes

Photosystem I

psaA, psaB, psaC, psaI, psaJ

Photosystem II

psbA, psbB, psbC, psbD, psbE, psbF, psbH, psbI, psbJ, psbK, psbL, psbN, psbT, psbZ

cytochrome b/f compelx

petA, *petB, *petD, petG, petL, petN

ATP synthase

atpA, atpB, atpE, *atpF, atpH, atpI

cytochrome c synthesis

ccsA

Assembly/stability of photosystem I

*ycf3,ycf4

NADPH dehydrogenase

*ndhA, *ndhB, ndhC, ndhD, ndhE, ndhF,ndhG, ndhH, ndhI, ndhJ, ndhK

Rubisco

rbcL

Transcription and translation related genes

transcription

rpoA, rpoB, *rpoC1, rpoC2

ribosomal proteins

rps2, rps3, rps4, rps7, rps8, rps11, *rps12, rps14,rps15, *rps16, rps18, rps19, rpl2, rpl14, *rpl16, rpl20, rpl22, rpl23, rpl32, rpl33,rpl36

RNA genes

ribosomal RNA

rrn5, rrn4.5, rrn16, rrn23

transfer RNA

*trnA-UGC, trnC-GCA, trnD-GUC, trnE-UUC, trnF-GAA,trnG-GCC, *trnG-UCC, trnH-GUG, trnI-CAU, *trnI-GAU,*trnK-UUU, trnL-CAA, *trnL-UAA, trnL-UAG, trnfM-CAU,trnM-CAU, trnN-GUU, trnP-UGG, trnQ-UUG,trnR-ACG, trnR-UCU, trnS-GCU, trnS-GGA, trnS-UGA, trnT-GGU,trnT-UGU, trnV-GAC, *trnV-UAC, trnW-CCA, trnY-GUA

Other genes

RNA processing

matK

carbon metabolism

cemA

fatty acid synthesis

accD

proteolysis

*clpP

Genes of unknown function

conserved reading frames

ycf1, ycf2