Table 3 Differentially expressed genes identified in developing wheat seeds at 30 days post anthesis of wheat genotypes with a high flour yield on milling. Transcriptome data from developing seeds at 30 days post anthesis of 13 poor milling and 19 high milling wheat genotypes obtained by next generation sequencing was subjected to RNA-Seq analysis followed by application of the Baggerley’s test to identify statistically significant differences in gene expression. The list of candidate genes shown are at FDR corrected P value of < 0.01 and sorted based on weighted proportion difference.

From: Fasciclin-like arabinogalactan protein gene expression is associated with yield of flour in the milling of wheat

Feature ID

Experiment - Fold Change (original values)

Baggerley’s test: Weighted proportions difference

Baggerley’s test: FDR p-value correction

Annotations

GH726097

−26.11

−1.94E-05

7.59E-10

WHEAT Fasciclin FLA8 OS = Triticum aestivum

TC379245

−4.55

−1.38E-05

5.47E-04

WHEAT Fasciclin FLA8 OS = Triticum aestivum

TC453372

30.34

3.35E-06

2.67E-03

No BLAST hit

TC416783

2.75

9.91E-06

5.47E-04

HORVD OS = Hordeum vulgare distichum

TC429180

4.53

2.13E-05

5.47E-04

WHEAT Fasciclin FLA8 OS = Triticum aestivum

TC419869

9.21

2.75E-05

4.33E-05

AEGTA Cell elongation DIMINUTO OS = Aegilops tauschii

CJ624986

45.34

3.87E-05

3.72E-04

AEGTA 40 S ribosomal S9–2 OS = Aegilops tauschii

TC373342

9.29

4.08E-05

8.98E-04

TRIUA Uncharacterized protein OS = Triticum urartu