Table 1 Main genomic features and sequencing type of Brazilian GBS isolates.

From: Large-scale genomic analyses reveal the population structure and evolutionary trends of Streptococcus agalactiae strains in Brazilian fish farms

Isolate

Size (bp)

CDS1

Pseudogenes

# of tRNA

Vertical Coverage (~fold)

Sequence-type

SA01

1841943

1656

172

62

76

NT2

SA05

1841945

1652

172

62

207

NT2

SA09

1841929

1638

189

62

69

NT2

SA16

1841859

1690

129

62

83

NT2

SA203

1841952

1678

233

62

1443

NT2

SA30

1841729

1592

234

62

163

NT2

SA33

1841628

1599

224

62

161

NT2

SA53

1848970

1700

123

64

187

260

SA73

1848838

1588

244

64

154

260

SA75

1849016

1667

159

64

233

260

SA79

1841946

1654

171

62

227

NT2

SA81

1840363

1687

129

62

240

NT2

SA85

1849989

1592

238

64

210

927

SA95

1856590

1707

122

64

304

927

SA97

1856410

1580

260

64

158

927

SA102

1849521

1510

320

64

135

927

SA132

1852032

1657

170

64

344

260

SA136

1849103

1643

180

64

377

260

SA159

1841483

1503

318

62

130

NT2

SA184

1841893

1608

218

62

218

NT2

SA191

1848676

1599

232

64

157

260

SA195

1841715

1596

232

62

175

NT2

SA201

1841834

1691

144

62

239

NT2

SA209

1841835

1684

141

62

268

NT2

SA212

1841962

1683

141

62

256

NT2

SA218

1849985

1706

121

64

269

927

SA220

1841963

1672

149

62

188

NT2

SA245

1848955

1690

135

64

318

260

SA256

1848972

1687

138

64

206

260

SA289

1848987

1705

122

64

235

260

SA330

1842081

1694

132

62

222

NT2

SA333

1842037

1705

119

62

226

NT2

SA341

1842113

1702

129

62

322

NT2

SA343

1841977

1702

118

62

464

NT2

SA346

1841984

1698

122

62

424

NT2

SA374

1842255

1644

184

62

162

NT2

SA375

1842219

1684

149

62

192

NT2

SA623

1842115

1729

98

64

134

NT2

SA627

1842066

1729

99

64

227

NT2

  1. 1Only undisrupted protein coding sequences, without pseudogenes.
  2. 2Non-typeable.
  3. 3Strain features from Pereira et al.20.