Table 1 Main genomic features and sequencing type of Brazilian GBS isolates.
Isolate | Size (bp) | CDS1 | Pseudogenes | # of tRNA | Vertical Coverage (~fold) | Sequence-type |
|---|---|---|---|---|---|---|
SA01 | 1841943 | 1656 | 172 | 62 | 76 | NT2 |
SA05 | 1841945 | 1652 | 172 | 62 | 207 | NT2 |
SA09 | 1841929 | 1638 | 189 | 62 | 69 | NT2 |
SA16 | 1841859 | 1690 | 129 | 62 | 83 | NT2 |
SA203 | 1841952 | 1678 | 233 | 62 | 1443 | NT2 |
SA30 | 1841729 | 1592 | 234 | 62 | 163 | NT2 |
SA33 | 1841628 | 1599 | 224 | 62 | 161 | NT2 |
SA53 | 1848970 | 1700 | 123 | 64 | 187 | 260 |
SA73 | 1848838 | 1588 | 244 | 64 | 154 | 260 |
SA75 | 1849016 | 1667 | 159 | 64 | 233 | 260 |
SA79 | 1841946 | 1654 | 171 | 62 | 227 | NT2 |
SA81 | 1840363 | 1687 | 129 | 62 | 240 | NT2 |
SA85 | 1849989 | 1592 | 238 | 64 | 210 | 927 |
SA95 | 1856590 | 1707 | 122 | 64 | 304 | 927 |
SA97 | 1856410 | 1580 | 260 | 64 | 158 | 927 |
SA102 | 1849521 | 1510 | 320 | 64 | 135 | 927 |
SA132 | 1852032 | 1657 | 170 | 64 | 344 | 260 |
SA136 | 1849103 | 1643 | 180 | 64 | 377 | 260 |
SA159 | 1841483 | 1503 | 318 | 62 | 130 | NT2 |
SA184 | 1841893 | 1608 | 218 | 62 | 218 | NT2 |
SA191 | 1848676 | 1599 | 232 | 64 | 157 | 260 |
SA195 | 1841715 | 1596 | 232 | 62 | 175 | NT2 |
SA201 | 1841834 | 1691 | 144 | 62 | 239 | NT2 |
SA209 | 1841835 | 1684 | 141 | 62 | 268 | NT2 |
SA212 | 1841962 | 1683 | 141 | 62 | 256 | NT2 |
SA218 | 1849985 | 1706 | 121 | 64 | 269 | 927 |
SA220 | 1841963 | 1672 | 149 | 62 | 188 | NT2 |
SA245 | 1848955 | 1690 | 135 | 64 | 318 | 260 |
SA256 | 1848972 | 1687 | 138 | 64 | 206 | 260 |
SA289 | 1848987 | 1705 | 122 | 64 | 235 | 260 |
SA330 | 1842081 | 1694 | 132 | 62 | 222 | NT2 |
SA333 | 1842037 | 1705 | 119 | 62 | 226 | NT2 |
SA341 | 1842113 | 1702 | 129 | 62 | 322 | NT2 |
SA343 | 1841977 | 1702 | 118 | 62 | 464 | NT2 |
SA346 | 1841984 | 1698 | 122 | 62 | 424 | NT2 |
SA374 | 1842255 | 1644 | 184 | 62 | 162 | NT2 |
SA375 | 1842219 | 1684 | 149 | 62 | 192 | NT2 |
SA623 | 1842115 | 1729 | 98 | 64 | 134 | NT2 |
SA627 | 1842066 | 1729 | 99 | 64 | 227 | NT2 |