Table 1 Top 1% PBS alleles located within top 1% nSL windows.
From: Evidence of Early-Stage Selection on EPAS1 and GPR126 Genes in Andean High Altitude Populations
Chr: position | Identifier | Allele frequency Collas | Allele frequency Lowlanders | Allele frequency Siberians | 1000 Genomes DAF | Impact | Associated gene | PBS p-value |
|---|---|---|---|---|---|---|---|---|
11:67209515 | rs111451405 | 74% | 44% | 3% | 4% | syn | CORO1B | 0.001 |
11:67072382 | rs61731786 | 71% | 44% | 3% | 7% | syn | SSH3 | 0.002 |
11:67076748 | rs12417770 | 71% | 44% | 3% | 7% | intronic | SSH3 | 0.002 |
11:67159257 | rs17880138 | 71% | 44% | 3% | 7% | promoter | RAD9A | 0.002 |
11:67165015 | rs2066494 | 71% | 44% | 3% | 6% | syn | RAD9A | 0.002 |
11:67057599 | rs1574103 | 71% | 47% | 3% | 4% | syn | ANKRD13D | 0.005 |
6:159062992 | rs882735 | 63% | 38% | 0% | 2% | intronic | DYNLT1 | 0.006 |
20:2840929 | rs2297048 | 58% | 25% | 18% | 4% | syn | VPS16 | 0.008 |
20:2844911 | rs2274671 | 58% | 25% | 18% | 5% | syn | PTPRA; VPS16 | 0.008 |
