Table 5 Predicted effector genes mined from differentially expressed genes of Heterodera avenae when exposed to wheat roots.

From: Transcriptional responses of wheat and the cereal cyst nematode Heterodera avenae during their early contact stage

Gene ID

Nr_annotation

Hit known effector genes

mRNA-Seq (log2FC)

c66622.graph_c0

PREDICTED: 14-3-3 protein epsilon-like [Mo]

GU130158 | 14-3-3 [Bx]

Inf (up)

c68622.graph_c0

Chitinase [Hg]

AF468679 | chitinase [Hg]

3.32

c72010.graph_c0

Beta-1,4-endoglucanase precursor [Gr]

AF006052 | Beta-1,4-endoglucanase-1 precursor [Hg]

1.02

c72543.graph_c0

Pectate lyase [Hg]

EF203898 | pectate lyase precursor [Hs]

1.94

c74386.graph_c0

14-3-3-like protein [Pp]

GU130158 | 14-3-3 [Bx]

6.27

c78853.graph_c0

Cathepsin L2 [Sc]

AJ557572 | putative cathepsin L protease [Mi]

1.83

  1. Bx: Bursaphelenchus xylophilus, Gr: Globodera rostochiensis, Hg: Heterodera glycines, Hs: Heterodera schachtii, Mi: Meloidogyne incognita, Mo: Metaseiulus occidentalis, Pp: Physarum polycephalum, and Sc: Sinonovacula constricta. Known effector genes are shown as GenBank Accession numbers followed by gene description. Inf (up) indicated the expression of the gene was detected only in the treatment sample, but not in the control sample. The genes marked in bold were validated by qPCR (Table 2). FC, fold change (treatment versus control).
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