Table 1 List of plants considered for this study. Scientific name (name) of the organisms considered, their classification (A (CHL): Algae Chlorophyta, A (CHA): Algae Charophyta, B: Bryophyta, L: Lycophyta, MA: Marchantiophyta, G: Gymnosperms, M: Monocots, D: Dicots), number of chromosomes (Chr), genome size estimation in Mb (Genome), total number of genes currently estimated (Gene), genomics resource, bibliographical reference (Source + Reference) and publication year (Year).
From: Shaping the evolutionary tree of green plants: evidence from the GST family
Name | Type | Chr (n) | Genome (Mb) | Gene (n) | Source + Reference | Year |
|---|---|---|---|---|---|---|
Vitis vinifera | D | 19 | 475 | 30434 | Cribi (v2) Jaillon et al. | 2007 |
Solanum tuberosum | D | 12 | 844 | 39031 | Spud db (PGSC_DM_v_3.4) The Potato Genome Sequencing Consortium | 2011 |
Solanum lycopersicum | D | 12 | 900 | 34727 | SGN (iTAG2.4) The Tomato Genome Consortium | 2012 |
Populus trichocarpa | D | 19 | 422.9 | 45778 | Phytozome 11 (v3.0) Tuskan et al. | 2006 |
Glycine max | D | 20 | 1115 | 46430 | Gramene Schmuz et al. | 2010 |
Coffee canephora | D | 11 | 710 | 25574 | Coffee genome Hub Denoeud et al. | 2014 |
Citrus sinensis | D | 9 | 367 | 29445 | Licciardello et al. Xu et al. | 2012 |
Capsicum annum | D | 12 | 3349 | 35336 | SGN (v1.55) Qin et al. | 2014 |
Arabidopsis thaliana | D | 5 | 125 | 25498 | TAIR10 The Arabidopsis Genome Initiative | 2000 |
Amborella trichopoda | D | 13 | 870 | 14000 | Phytozome 11 (v1.0) Amborella Genome Project | 2013 |
Zea mays | M | 10 | 2300 | 32540 | Phytozome 11 (Ensembl-18) Schnable et al. | 2009 |
Spirodela polyrhiza | M | 20 | 158 | 19623 | Phytozome 11 (v2) Wang et al. | 2013 |
Oryza sativa | M | 12 | 420 | 29961 | TIGR Goff et al. | 2005 |
Picea abies | G | 12 | 19600 | 28354 | Congenie (v1) Nystedt et al. | 2013 |
Selaginella moellendorffii | L | 27 | 212.5 | 22285 | Phytozome 11 (v1.0) | |
Banks et al. | 2011 | |||||
Marchantia polymorpha | MA | / | 225.8 | 19287 | Phytozome 11 (v3.1) https://phytozome.jgi.doe.gov | 2016 |
Sphagnum fallax | B | / | 395 | 26939 | Phytozome 11 (v0.5) https://phytozome.jgi.doe.gov | 2015 |
Physcomitrella patens | B | 27 | 510 | 35938 | Liu et al. Rensing et al. | 2008 |
Klebsormidium flaccidum | A (CHA) | 22–26 | 117.1 ± 21.8 | 16215 | CGA Hori et al. | 2014 |
Micromonas pusilla CCMP1545 | A (CHL) | 17 | 21.95 | 10575 | Phytozome 11 (v3.0) Worden et al. | 2009 |
