Table 1 Significant pathways of hiPSCs/HFF and hESCs/HFF.

From: Combining membrane proteomics and computational three-way pathway analysis revealed signalling pathways preferentially regulated in human iPSCs and human ESCs

Pathway

hiPSCs/HFF (p-val/FDR)

hESCs/HFF (p-val/FDR)

REACTOME: platelet activation signaling and aggregation

DOWN 0.000/0.000

DOWN 0.000/0.000

REACTOME: hemostasis

DOWN 0.000/0.002

DOWN 0.000/0.007

REACTOME: adaptive immune system

DOWN 0.002/0.003

DOWN 0.002/0.002

REACTOME: immune system

DOWN 0.000/0.003

DOWN 0.002/0.006

KEGG: regulation of actin cytoskeleton

DOWN 0.000/0.000

DOWN 0.000/0.000

KEGG: focal adhesion

DOWN 0.000/0.000

DOWN 0.000/0.001

KEGG: leukocyte transendothelial migration

DOWN 0.101/0.132

DOWN 0.060/0.088

REACTOME: axon guidance

DOWN 0.000/0.004

DOWN 0.000/0.010

REACTOME: developmental biology

DOWN 0.002/0.003

DOWN 0.002/0.009

REACTOME: TCA cycle and respiratory electron transport

UP 0.000/0.004

UP 0.000/0.001

KEGG: oxidative phosphorylation

UP 0.000/0.001

UP 0.000/0.000

KEGG: Alzheimer’s disease

UP 0.159/0.196

UP 0.084/0.074

KEGG: Huntington’s disease

UP 0.000/0.001

UP 0.000/0.000

KEGG: tight junction

DOWN 0.222/0.214

N/A—

REACTOME: respiratory electron transport ATP synthesis by chemiosmotic coupling and heat production by uncoupling proteins

UP 0.000/0.003

N/A—

KEGG: Parkinson’s disease

UP 0.000/0.001

N/A—

REACTOME: post-translational protein modification

UP 0.004/0.020

N/A 0.224/0.601

REACTOME: metabolism of proteins

UP 0.002/0.039

N/A 0.088/0.694

REACTOME: asparagine N-linked glycosylation

UP 0.105/0.204

N/A 0.534/0.626

  1. UP: up-regulation; DOWN: down-regulation; N/A: not applicable; hiPSCs: human induced pluripotent stem cells; hESCs: human embryonic stem cells; HFF: human foreskin fibroblast; p-val: p-value; FDR: false discovery rate; —: not in GSEA.