Table 1 Summary statistics for flowering Chinese cabbage clean reads in the six libraries mapped to the Brassica rapa reference genome.
Stage | S1 | S3 | S5 | |||
|---|---|---|---|---|---|---|
Library | S1-1 | S1-2 | S3-1 | S3-2 | S5-1 | S5-2 |
Clean reads | 21,635,728 | 21,942,576 | 25,842,072 | 20,554,776 | 23,718,748 | 24,395,642 |
High quality clean reads (%) | 21,630,166 (99.97%) | 21,934,758 (99.96%) | 25,833,896 (99.97%) | 20,548,120 (99.97%) | 23,707,618 (99.95%) | 24,387,698 (99.97%) |
Removed rRNA reads (%) | 18,923,678 (87.49%) | 19,461,054 (88.72%) | 22,791,392 (88.22%) | 18,349,778 (89.30%) | 18,927,670 (79.84%) | 21,879,804 (89.72%) |
Mapped reads (%) | 143,837,93 (76.01%) | 14,794,144 (76.02%) | 17,225,475 (75.57%) | 13,855,253 (75.51%) | 14,476,371 (76.48%) | 16,841,272 (76.97) |
Unique mapped reads (%) | 14,269,607 (75.41%) | 14,676,810 (75.42%) | 17,054,871 (74.83%) | 13,728,653 (74.82%) | 14,329,425 (75.71%) | 16,676,832 (76.22%) |
Multiple mapped reads | 114,186 (0.60%) | 117,334 (0.60%) | 170,604 (0.75%) | 126,600 (0.69%) | 146,946 (0.78%) | 164,440 (0.75%) |
All genes | 29,445 | 29,274 | 30,127 | 28,612 | 32,169 | 33,006 |
Known genes (%) | 28,730 (71.35%) | 28,562 (70.93%) | 29,393 (73.00%) | 27,913 (69.32%) | 31,386 (77.95%) | 32,158 (79.86%) |
Novel transcripts | 715 | 712 | 734 | 699 | 783 | 848 |
