Table 1 CDPK gene family in turnip.
Gene | Gene Locus | CDS (bp) | No. of EF hands | MW (KDa) | pI | GRAVY | N-Myr | N-Pal | N-Term |
|---|---|---|---|---|---|---|---|---|---|
BrrCDPK1 | chr1:1427121..1430241(−) | 1638 | 4 | 61.16 | 5.48 | −0.347 | Y | Y | N |
BrrCDPK2 | chr1:6395129..6397523(+) | 1722 | 4 | 64.88 | 5.71 | −0.525 | Y | Y | N |
BrrCDPK3 | chr1:7348109..7350449(−) | 1578 | 4 | 58.8 | 6.09 | −0.541 | Y | N | N |
BrrCDPK4 | chr1:8994725..8997312(−) | 1461 | 4 | 54.99 | 5.29 | −0.298 | N | Y | N |
BrrCDPK5 | chr1:22510976..22514438(+) | 1581 | 3 | 59.79 | 5.28 | −0.452 | N | Y | N |
BrrCDPK6 | chr2:3018873..3022140(+) | 1542 | 4 | 57.66 | 5.69 | −0.416 | N | N | Y |
BrrCDPK7 | chr2:4702301..4706984(−) | 1746 | 4 | 57.73 | 5.56 | −0.487 | Y | Y | N |
BrrCDPK8 | chr2:4737776..4740369(−) | 1605 | 4 | 60.14 | 5.99 | −0.445 | Y | Y | N |
BrrCDPK9 | chr2:25412374..25416270(+) | 1467 | 4 | 55.34 | 5.25 | −0.357 | N | Y | N |
BrrCDPK10 | chr2:25416270..25420163(+) | 1281 | 4 | 48.02 | 5.37 | −0.26 | N | Y | N |
BrrCDPK11 | chr2:25420163..25422289(+) | 1467 | 4 | 55.41 | 5.17 | −0.42 | N | Y | N |
BrrCDPK12 | chr3:795109..797500(−) | 1800 | 4 | 66.74 | 5.23 | −0.398 | Y | Y | N |
BrrCDPK13 | chr3:2194413..2196401(+) | 1572 | 4 | 58.23 | 5.66 | −0.486 | Y | Y | N |
BrrCDPK14 | chr3:7345714..7348731(+) | 1746 | 4 | 66.04 | 6.36 | −0.437 | Y | Y | N |
BrrCDPK15 | chr3:9231301..9233800(−) | 1701 | 4 | 62.86 | 5.45 | −0.385 | Y | Y | N |
BrrCDPK16 | chr3:12406317..12408965(+) | 1503 | 4 | 56.28 | 5.21 | −0.362 | N | N | N |
BrrCDPK17 | chr3:15992546..15997951(−) | 2880 | 4 | 106.2 | 5.67 | −0.318 | Y | N | N |
BrrCDPK18 | chr3:18412320..18414842(+) | 1629 | 4 | 60.71 | 5.64 | −0.513 | Y | Y | N |
BrrCDPK19 | chr3:21931910..21934109(+) | 1587 | 4 | 59.45 | 6.2 | −0.413 | Y | Y | N |
BrrCDPK20 | chr3:25161436..25179997(−) | 1599 | 4 | 59.48 | 6.31 | −0.52 | Y | N | N |
BrrCDPK21 | chr3:29788001..29794408(+) | 1647 | 4 | 61.58 | 5.68 | −0.344 | Y | Y | N |
BrrCDPK22 | chr3:30065232..30067756(−) | 1626 | 4 | 61.54 | 7.2 | −0.584 | Y | Y | N |
BrrCDPK23 | chr4:4423201..4426117(−) | 1587 | 4 | 59.51 | 6.67 | −0.416 | Y | Y | N |
BrrCDPK24 | chr4:14104630..14111261(−) | 1770 | 4 | 67.48 | 5.86 | −0.421 | N | Y | N |
BrrCDPK25 | chr4:15518281..15520338(−) | 1548 | 1 | 58.28 | 5.22 | −0.605 | N | Y | N |
BrrCDPK26 | chr4:17611402..17613847(−) | 1596 | 4 | 60.16 | 7.62 | −0.413 | Y | Y | N |
BrrCDPK27 | chr5:1238237..1240655(−) | 1599 | 4 | 60.27 | 6.57 | −0.381 | Y | Y | N |
BrrCDPK28 | chr5:6815494..6817962(−) | 1755 | 4 | 66.3 | 6.41 | −0.482 | Y | Y | N |
BrrCDPK29 | chr5:6846637..6848824(+) | 1290 | 4 | 48.25 | 5.64 | −0.465 | Y | Y | N |
BrrCDPK30 | chr5:8688703..8691245(−) | 1563 | 4 | 58.65 | 6.16 | −0.463 | Y | Y | N |
BrrCDPK31 | chr5:13486470..13488611(−) | 1494 | 4 | 56.13 | 5.22 | −0.355 | N | Y | N |
BrrCDPK32 | chr5:21874565..21880352(+) | 2841 | 4 | 104.74 | 5.54 | −0.349 | N | Y | N |
BrrCDPK33 | chr6:7326856..7329517(−) | 1638 | 4 | 61.31 | 6.08 | −0.333 | Y | Y | N |
BrrCDPK34 | chr6:16110279..16113027(+) | 1746 | 4 | 65.7 | 9.34 | −0.65 | Y | Y | N |
BrrCDPK35 | chr6:16346677..16349111(−) | 1620 | 4 | 60.57 | 5.19 | −0.373 | Y | Y | N |
BrrCDPK36 | chr6:16558944..16564439(−) | 2763 | 4 | 103.93 | 6.53 | −0.497 | N | Y | N |
BrrCDPK37 | chr6:26153739..26159782(+) | 2688 | 4 | 101.89 | 6.38 | −0.289 | N | Y | N |
BrrCDPK38 | chr7:10206195..10208957(+) | 1584 | 4 | 59.61 | 8.75 | −0.489 | N | N | N |
BrrCDPK39 | chr7:12333863..12336698(−) | 1617 | 4 | 60.84 | 5.88 | −0.534 | Y | Y | N |
BrrCDPK40 | chr7:20243361..20245669(−) | 1641 | 4 | 61.94 | 6.35 | −0.411 | Y | Y | N |
BrrCDPK41 | chr7:20745194..20750493(+) | 1584 | 4 | 59.51 | 5.76 | −0.473 | Y | Y | N |
BrrCDPK42 | chr9:4100343..4103209(−) | 1617 | 4 | 60.81 | 8.95 | −0.531 | Y | N | N |
BrrCDPK43 | chr9:4562547..4566596(+) | 1653 | 4 | 61.64 | 5.22 | −0.363 | Y | N | N |
BrrCDPK44 | chr9:17398820..17401327(+) | 1446 | 4 | 54.34 | 5.48 | −0.364 | Y | Y | N |
BrrCDPK45 | chr9:17401578..17404101(+) | 1038 | 3 | 38.45 | 5.42 | −0.427 | N | Y | N |
BrrCDPK46 | chr9:25902015..25904900(+) | 1587 | 4 | 59.43 | 6.5 | −0.405 | Y | Y | N |
BrrCDPK47 | chr9:28600885..28603862(−) | 1626 | 4 | 61.34 | 6.25 | −0.475 | Y | Y | N |
BrrCDPK48 | chr9:32643372..32645805(+) | 1596 | 4 | 60.15 | 6.63 | −0.378 | Y | Y | N |
BrrCDPK49 | chr10:10265097..10267598(−) | 1485 | 4 | 55.75 | 5.04 | −0.373 | N | Y | N |
BrrCDPK50 | chr10:10687217..10690252(+) | 1437 | 4 | 54.17 | 5.6 | −0.402 | N | Y | Y |
BrrCDPK51 | chr10:10715953..10718319(+) | 1554 | 4 | 57.67 | 5.45 | −0.451 | Y | Y | N |
BrrCDPK52 | chr10:11422385..11427765(+) | 2676 | 4 | 96.97 | 8.81 | −0.565 | Y | Y | N |
BrrCDPK53 | chr10:14191675..14201474(+) | 1599 | 4 | 59.46 | 5.92 | −0.418 | Y | Y | N |
BrrCDPK54 | chr10:14320716..14323063(−) | 1569 | 4 | 57.84 | 5.82 | −0.444 | Y | Y | N |
BrrCDPK55 | chr10:16497118..16499567(+) | 1776 | 4 | 65.76 | 5.38 | −0.394 | Y | Y | N |
