Table 1 List of candidate targets of miR-34a and miR-449a predicted by miRDB.
From: microRNA-449a modulates medullary thymic epithelial cell differentiation
Predicted targets for mmu-miR-34a in miRDB | Predicted targets for mmu-miR-449a in miRDB | ||||
|---|---|---|---|---|---|
Target Score | Gene Symbol | Gene Description | Target Score | Gene Symbol | Gene Description |
100 | Arhgap26 | Rho GTPase activating protein 26 | 100 | Erc1 | ELKS/RAB6-interacting/CAST family member 1 |
100 | Erc1 | ELKS/RAB6-interacting/CAST family member 1 | 100 | Arhgap26 | Rho GTPase activating protein 26 |
100 | Vamp2 | vesicle-associated membrane protein 2 | 100 | Vamp2 | vesicle-associated membrane protein 2 |
100 | Syt1 | synaptotagmin I | 100 | Syt1 | synaptotagmin I |
99 | E2f5 | E2F transcription factor 5 | 99 | E2f5 | E2F transcription factor 5 |
99 | Tbc1d2b | TBC1 domain family, member 2B | 99 | Fam76a | family with sequence similarity 76, member A |
99 | Fam76a | family with sequence similarity 76, member A | 99 | Tbc1d2b | TBC1 domain family, member 2B |
99 | Ppp2r5a | protein phosphatase 2, regulatory subunit B′, alpha | 99 | Mpp2 | membrane protein, palmitoylated 2 (MAGUK p55 subfamily member 2) |
99 | Mpp2 | membrane protein, palmitoylated 2 (MAGUK p55 subfamily member 2) | 99 | Ppp2r5a | protein phosphatase 2, regulatory subunit B′, alpha |
99 | Ppp1r11 | protein phosphatase 1, regulatory (inhibitor) subunit 11 | 99 | Notch1 | notch 1 |
99 | Notch1 | notch 1 | 98 | Ttc19 | tetratricopeptide repeat domain 19 |
98 | Ttc19 | tetratricopeptide repeat domain 19 | 98 | Osgin2 | oxidative stress induced growth inhibitor family member 2 |
98 | Zfhx4 | zinc finger homeodomain 4 | 98 | Zfhx4 | zinc finger homeodomain 4 |
98 | Akap6 | A kinase (PRKA) anchor protein 6 | 98 | Slc6a1 | solute carrier family 6 (neurotransmitter transporter, GABA), member 1 |
98 | Abr | active BCR-related gene | 98 | Zfp644 | zinc finger protein 644 |
98 | Camta1 | calmodulin binding transcription activator 1 | 98 | Camta1 | calmodulin binding transcription activator 1 |
98 | Slc6a1 | solute carrier family 6 (neurotransmitter transporter, GABA), member 1 | 98 | Abr | active BCR-related gene |
98 | Osgin2 | oxidative stress induced growth inhibitor family member 2 | 98 | Slc44a2 | solute carrier family 44, member 2 |
98 | Zfp644 | zinc finger protein 644 | 98 | Akap6 | A kinase (PRKA) anchor protein 6 |
97 | Ubl4 | ubiquitin-like 4 | 97 | Mmp25 | matrix metallopeptidase 25 |
97 | Hspb6 | heat shock protein, alpha-crystallin-related, B6 | 97 | Il6ra | interleukin 6 receptor, alpha |
97 | Pitpnc1 | phosphatidylinositol transfer protein, cytoplasmic 1 | 97 | Mycn | v-myc myelocytomatosis viral related oncogene, neuroblastoma derived (avian) |
97 | Il6ra | interleukin 6 receptor, alpha | 97 | Calcr | calcitonin receptor |
97 | Mmp25 | matrix metallopeptidase 25 | 97 | Hspb6 | heat shock protein, alpha-crystallin-related, B6 |
97 | Pnoc | prepronociceptin | 97 | Ppp1r11 | protein phosphatase 1, regulatory (inhibitor) subunit 11 |
97 | Mycn | v-myc myelocytomatosis viral related oncogene, neuroblastoma derived (avian) | 97 | Pitpnc1 | phosphatidylinositol transfer protein, cytoplasmic 1 |
97 | Tmem79 | transmembrane protein 79 | 97 | Cbfa2t3 | core-binding factor, runt domain, alpha subunit 2, translocated to, 3 (human) |
97 | Zfp775 | zinc finger protein 775 | 97 | 4930544G11Rik | RIKEN cDNA 4930544G11 gene |
97 | Cbfa2t3 | core-binding factor, runt domain, alpha subunit 2, translocated to, 3 (human) | 97 | Ubl4 | ubiquitin-like 4 |
97 | Soga1 | suppressor of glucose, autophagy associated 1 | 97 | Pnoc | prepronociceptin |
97 | Fbxo30 | F-box protein 30 | 97 | Tmem79 | transmembrane protein 79 |
97 | Nfam1 | Nfat activating molecule with ITAM motif 1 | 97 | Arhgap1 | Rho GTPase activating protein 1 |
97 | Calcr | calcitonin receptor | 97 | Fbxo30 | F-box protein 30 |
97 | Arhgap1 | Rho GTPase activating protein 1 | 96 | Cntn2 | contactin 2 |
96 | Ddx17 | DEAD (Asp-Glu-Ala-Asp) box polypeptide 17 | 96 | Ddx17 | DEAD (Asp-Glu-Ala-Asp) box polypeptide 17 |
96 | Ctnnd2 | catenin (cadherin associated protein), delta 2 | 96 | Mllt3 | myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 3 |
96 | Hexa | hexosaminidase A | 96 | Ctnnd2 | catenin (cadherin associated protein), delta 2 |
96 | Pacs1 | phosphofurin acidic cluster sorting protein 1 | 96 | Pacs1 | phosphofurin acidic cluster sorting protein 1 |
96 | Cuedc1 | CUE domain containing 1 | 96 | Hexa | hexosaminidase A |
96 | Mllt3 | myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 3 | 95 | Pogz | pogo transposable element with ZNF domain |
96 | Cntn2 | contactin 2 | 95 | Ppp2r3a | protein phosphatase 2, regulatory subunit B″, alpha |
95 | Pogz | pogo transposable element with ZNF domain | 95 | Sfmbt2 | Scm-like with four mbt domains 2 |
95 | Snx15 | sorting nexin 15 | 95 | Dgkz | diacylglycerol kinase zeta |
95 | Tbl1xr1 | transducin (beta)-like 1X-linked receptor 1 | 95 | Tbl1xr1 | transducin (beta)-like 1X-linked receptor 1 |
95 | Dgkz | diacylglycerol kinase zeta | 95 | Lef1 | lymphoid enhancer binding factor 1 |
95 | Lef1 | lymphoid enhancer binding factor 1 | 95 | Satb2 | special AT-rich sequence binding protein 2 |
95 | Sfmbt2 | Scm-like with four mbt domains 2 | 94 | Astn1 | astrotactin 1 |
94 | Ahcyl2 | S-adenosylhomocysteine hydrolase-like 2 | 94 | Eml5 | echinoderm microtubule associated protein like 5 |
94 | Slc44a2 | solute carrier family 44, member 2 | 94 | Ranbp10 | RAN binding protein 10 |
94 | Eml5 | echinoderm microtubule associated protein like 5 | 94 | Met | met proto-oncogene |
94 | Ranbp10 | RAN binding protein 10 | 94 | Strn3 | striatin, calmodulin binding protein 3 |
94 | Astn1 | astrotactin 1 | 94 | Zmym4 | zinc finger, MYM-type 4 |
94 | Strn3 | striatin, calmodulin binding protein 3 | 94 | Hnf4a | hepatic nuclear factor 4, alpha |
94 | Met | met proto-oncogene | 94 | Rfx3 | regulatory factor X, 3 (influences HLA class II expression) |
94 | Hnf4a | hepatic nuclear factor 4, alpha | 94 | Ahcyl2 | S-adenosylhomocysteine hydrolase-like 2 |
94 | Rfx3 | regulatory factor X, 3 (influences HLA class II expression) | 93 | Pkp4 | plakophilin 4 |
94 | Zmym4 | zinc finger, MYM-type 4 | 93 | Ubp1 | upstream binding protein 1 |
93 | Slc4a7 | solute carrier family 4, sodium bicarbonate cotransporter, member 7 | 93 | Tmem255a | transmembrane protein 255 A |
93 | Tmem255a | transmembrane protein 255 A | 93 | Etl4 | enhancer trap locus 4 |
93 | Pkp4 | plakophilin 4 | 93 | Slc4a7 | solute carrier family 4, sodium bicarbonate cotransporter, member 7 |
93 | Tmem55a | transmembrane protein 55 A | 92 | Iqgap3 | IQ motif containing GTPase activating protein 3 |
93 | Ubp1 | upstream binding protein 1 | 92 | Nav3 | neuron navigator 3 |
93 | Etl4 | enhancer trap locus 4 | 92 | Trim67 | tripartite motif-containing 67 |
92 | Scml2 | sex comb on midleg-like 2 (Drosophila) | 92 | Scml2 | sex comb on midleg-like 2 (Drosophila) |
92 | Taf5 | TAF5 RNA polymerase II, TATA box binding protein (TBP)-associated factor | 92 | Papss2 | 3′-phosphoadenosine 5′-phosphosulfate synthase 2 |
92 | Iqgap3 | IQ motif containing GTPase activating protein 3 | 92 | Taf5 | TAF5 RNA polymerase II, TATA box binding protein (TBP)-associated factor |
92 | Uhrf2 | ubiquitin-like, containing PHD and RING finger domains 2 | 92 | Plcb1 | phospholipase C, beta 1 |
92 | Rtn4rl1 | reticulon 4 receptor-like 1 | 92 | Daam1 | dishevelled associated activator of morphogenesis 1 |
92 | Daam1 | dishevelled associated activator of morphogenesis 1 | 92 | Nat8l | N-acetyltransferase 8-like |
92 | Papss2 | 3′-phosphoadenosine 5′-phosphosulfate synthase 2 | 92 | Rtn4rl1 | reticulon 4 receptor-like 1 |
92 | Plcb1 | phospholipase C, beta 1 | 92 | Uhrf2 | ubiquitin-like, containing PHD and RING finger domains 2 |
92 | Trim67 | tripartite motif-containing 67 | 92 | Vdr | vitamin D receptor |
92 | Vdr | vitamin D receptor | 92 | Slc35g2 | solute carrier family 35, member G2 |
92 | 4930544G11Rik | RIKEN cDNA 4930544G11 gene | 91 | Coro1c | coronin, actin binding protein 1 C |
92 | Nav3 | neuron navigator 3 | 91 | Stag3 | stromal antigen 3 |
92 | Nat8l | N-acetyltransferase 8-like | 91 | H6pd | hexose-6-phosphate dehydrogenase (glucose 1-dehydrogenase) |
91 | Lzts3 | leucine zipper, putative tumor suppressor family member 3 | 91 | Crkl | v-crk sarcoma virus CT10 oncogene homolog (avian)-like |
91 | Stag3 | stromal antigen 3 | 91 | Soga1 | suppressor of glucose, autophagy associated 1 |
91 | Pea15a | phosphoprotein enriched in astrocytes 15 A | 91 | Vat1 | vesicle amine transport protein 1 homolog (T californica) |
91 | Padi2 | peptidyl arginine deiminase, type II | 91 | Padi2 | peptidyl arginine deiminase, type II |
91 | H6pd | hexose-6-phosphate dehydrogenase (glucose 1-dehydrogenase) | 91 | Pea15a | phosphoprotein enriched in astrocytes 15 A |
91 | Coro1c | coronin, actin binding protein 1 C | 91 | Rps6ka4 | ribosomal protein S6 kinase, polypeptide 4 |
91 | Rps6ka4 | ribosomal protein S6 kinase, polypeptide 4 | 91 | Frk | fyn-related kinase |
91 | Frk | fyn-related kinase | 90 | Tanc2 | tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2 |
91 | Vat1 | vesicle amine transport protein 1 homolog (T californica) | 90 | Ing5 | inhibitor of growth family, member 5 |
91 | Crkl | v-crk sarcoma virus CT10 oncogene homolog (avian)-like | 90 | Tmem25 | transmembrane protein 25 |
90 | Itsn1 | intersectin 1 (SH3 domain protein 1 A) | 90 | Itsn1 | intersectin 1 (SH3 domain protein 1 A) |
90 | Tmem25 | transmembrane protein 25 | 90 | Car7 | carbonic anhydrase 7 |
90 | Ing5 | inhibitor of growth family, member 5 | 90 | Ccne2 | cyclin E2 |
90 | Gpr158 | G protein-coupled receptor 158 | 90 | Gpr158 | G protein-coupled receptor 158 |
90 | Tanc2 | tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2 | 90 | Map1a | microtubule-associated protein 1 A |
90 | Pdgfrb | platelet derived growth factor receptor, beta polypeptide | 89 | Cuedc1 | CUE domain containing 1 |
90 | Car7 | carbonic anhydrase 7 | 89 | Zfp120 | zinc finger protein 120 |
90 | Ccne2 | cyclin E2 | 89 | Tom1 | target of myb1 homolog (chicken) |
89 | Srpr | signal recognition particle receptor (‘docking protein’) | 89 | Patz1 | POZ (BTB) and AT hook containing zinc finger 1 |
89 | Zfp120 | zinc finger protein 120 | 89 | Srpr | signal recognition particle receptor (‘docking protein’) |
89 | Satb2 | special AT-rich sequence binding protein 2 | 89 | Vwa5b2 | von Willebrand factor A domain containing 5B2 |
89 | Tom1 | target of myb1 homolog (chicken) | 89 | S1pr3 | sphingosine-1-phosphate receptor 3 |
89 | Casp2 | caspase 2 | 89 | Nfam1 | Nfat activating molecule with ITAM motif 1 |
89 | S1pr3 | sphingosine-1-phosphate receptor 3 | 89 | Casp2 | caspase 2 |
89 | Vwa5b2 | von Willebrand factor A domain containing 5B2 | 88 | Scn2b | sodium channel, voltage-gated, type II, beta |
89 | Patz1 | POZ (BTB) and AT hook containing zinc finger 1 | 88 | Sar1a | |
88 | Sar1a | SAR1 gene homolog A (S. cerevisiae) | 88 | Nup210 | nucleoporin 210 |
88 | Rragc | Ras-related GTP binding C | 88 | Pdgfra | platelet derived growth factor receptor, alpha polypeptide |
88 | Scn2b | sodium channel, voltage-gated, type II, beta | 88 | Nrip3 | nuclear receptor interacting protein 3 |
88 | Nup210 | nucleoporin 210 | 88 | Ddn | dendrin |
88 | Pdgfra | platelet derived growth factor receptor, alpha polypeptide | 88 | Rragc | Ras-related GTP binding C |
88 | Ddn | dendrin | 87 | Scamp4 | secretory carrier membrane protein 4 |
88 | Nrip3 | nuclear receptor interacting protein 3 | 87 | Tgif2 | TGFB-induced factor homeobox 2 |
87 | Fam167a | family with sequence similarity 167, member A | 87 | Ltbp2 | latent transforming growth factor beta binding protein 2 |
87 | Fam46a | family with sequence similarity 46, member A | 87 | Fam46a | family with sequence similarity 46, member A |
87 | Wasf1 | WAS protein family, member 1 | 87 | Wasf1 | WAS protein family, member 1 |
87 | Ltbp2 | latent transforming growth factor beta binding protein 2 | 87 | Fam167a | family with sequence similarity 167, member A |
87 | Tgif2 | TGFB-induced factor homeobox 2 | 87 | Stk10 | serine/threonine kinase 10 |
87 | Scamp4 | secretory carrier membrane protein 4 | 86 | Gmfb | glia maturation factor, beta |
87 | Stk10 | serine/threonine kinase 10 | 86 | Metap1 | methionyl aminopeptidase 1 |
86 | Metap1 | methionyl aminopeptidase 1 | 86 | Fam131b | family with sequence similarity 131, member B |
86 | Dpysl4 | dihydropyrimidinase-like 4 | 86 | Celf3 | CUGBP, Elav-like family member 3 |
86 | Gmfb | glia maturation factor, beta | 86 | Lman1 | lectin, mannose-binding, 1 |
86 | Lman1 | lectin, mannose-binding, 1 | 86 | Angpt1 | angiopoietin 1 |
86 | Ppp2r3a | protein phosphatase 2, regulatory subunit B″, alpha | 86 | Isg20 | interferon-stimulated protein |
86 | Celf3 | CUGBP, Elav-like family member 3 | 85 | Usf1 | upstream transcription factor 1 |
86 | Fam131b | family with sequence similarity 131, member B | 85 | Gpr165 | G protein-coupled receptor 165 |
85 | Dip2c | DIP2 disco-interacting protein 2 homolog C (Drosophila) | 85 | Gmnc | geminin coiled-coil domain containing |
85 | Gpr165 | G protein-coupled receptor 165 | 85 | Synj1 | synaptojanin 1 |
85 | Sec61a1 | Sec61 alpha 1 subunit (S. cerevisiae) | 85 | Dip2c | DIP2 disco-interacting protein 2 homolog C (Drosophila) |
85 | Gmnc | geminin coiled-coil domain containing | 85 | Rnf4 | ring finger protein 4 |
85 | Synj1 | synaptojanin 1 | 85 | Sec61a1 | Sec61 alpha 1 subunit (S. cerevisiae) |
85 | Usf1 | upstream transcription factor 1 | |||
85 | Rnf4 | ring finger protein 4 | |||