Table 2 Results of multi-marker (GEMMA) and Bayesian B (GenSel) genome-wide association analysis for small yellow follicle.
From: Genetic Architecture and Candidate Genes Identified for Follicle Number in Chicken
Chr | SNP | Position | GEMMA | GenSel | |||||
|---|---|---|---|---|---|---|---|---|---|
Minor/Major allele | beta | s.e | P vaule | Window (SNPs) | %GV | Model freq. | |||
28 | rs316444293 | 2342019 | C/A | 3.29E-01 | 5.77E-02 | 1.39E-08 | 125 | 0.63 | 0.0048 |
28 | rs316038837 | 1947008 | T/C | 4.02E-01 | 5.79E-02 | 6.57E-12 | 148 | 0.67 | 0.0063 |
28 | rs16210881 | 1829370 | G/A | 3.62E-01 | 5.53E-02 | 9.27E-11 | 322 | 0.73 | 0.0042 |
28 | rs313648246 | 2010929 | A/T | 2.90E-01 | 4.52E-02 | 2.01E-10 | 255 | 0.57 | 0.0053 |
28 | rs316105069 | 2123244 | A/G | 3.66E-01 | 6.19E-02 | 4.28E-09 | 156 | 0.69 | 0.0037 |
28 | rs318236639 | 1929393 | A/G | 2.91E-01 | 4.96E-02 | 4.80E-09 | 169 | 1.23 | 0.0056 |
28 | rs314802132 | 1542976 | C/A | 3.09E-01 | 5.08E-02 | 1.53E-09 | 218 | 0.54 | 0.0053 |
28 | rs313479236 | 1821752 | C/T | 2.99E-01 | 5.16E-02 | 7.16E-09 | 129 | 0.58 | 0.0049 |
28 | rs313972624 | 1732609 | C/A | 2.80E-01 | 5.00E-02 | 2.22E-08 | 216 | 0.78 | 0.0068 |
28 | rs317337799 | 1754154 | C/T | 2.51E-01 | 4.55E-02 | 3.63E-08 | 226 | 0.53 | 0.0145 |
28 | rs316358363 | 1626264 | A/G | 3.15E-01 | 5.77E-02 | 5.45E-08 | 175 | 0.55 | 0.0052 |
28 | rs14305824 | 2179908 | A/G | 2.87E-01 | 5.49E-02 | 1.73E-07 | 263 | 0.65 | 0.0063 |
28 | rs316367068 | 1524526 | A/G | 2.71E-01 | 5.19E-02 | 1.76E-07 | 145 | 0.63 | 0.0038 |
28 | rs312811524 | 1786822 | C/G | 2.38E-01 | 4.55E-02 | 1.76E-07 | 128 | 0.74 | 0.0043 |
28 | rs13663720 | 1788269 | T/C | 3.19E-01 | 6.12E-02 | 1.85E-07 | 312 | 0.66 | 0.0049 |
28 | rs312586874 | 1449431 | A/G | 2.65E-01 | 5.10E-02 | 1.96E-07 | 215 | 0.56 | 0.0053 |
28 | rs16211274 | 1463378 | A/G | 2.46E-01 | 4.89E-02 | 4.70E-07 | 179 | 1.26 | 0.0046 |
28 | rs318099911 | 2163700 | C/T | 3.06E-01 | 6.09E-02 | 4.98E-07 | 268 | 0.54 | 0.0053 |
28 | rs316574537 | 2432874 | T/C | 2.86E-01 | 5.68E-02 | 4.98E-07 | 219 | 0.52 | 0.0059 |
28 | rs314231916 | 1709862 | A/G | 2.29E-01 | 4.56E-02 | 5.52E-07 | 316 | 0.69 | 0.0068 |
28 | rs314907214 | 1443055 | G/A | 2.49E-01 | 5.02E-02 | 6.98E-07 | 326 | 0.53 | 0.0125 |
17 | rs312873273 | 1366852 | G/C | 3.02E-01 | 5.33E-02 | 2.20E-08 | 275 | 0.55 | 0.0042 |
28 | rs16211139 | 1602011 | G/C | 2.69E-01 | 5.05E-02 | 1.02E-07 | 163 | 0.75 | 0.0053 |
28 | rs315697880 | 1623888 | C/T | 3.28E-01 | 5.78E-02 | 1.57E-08 | 155 | 0.53 | 0.0048 |
28 | rs14306530 | 1499327 | T/C | 3.24E-01 | 5.97E-02 | 5.73E-08 | 188 | 0.64 | 0.0053 |
28 | rs16211213 | 1541935 | A/G | 3.15E-01 | 5.81E-02 | 6.36E-08 | 322 | 0.66 | 0.0039 |
28 | rs314643774 | 1910877 | G/A | 2.46E-01 | 4.55E-02 | 7.03E-08 | 255 | 0.76 | 0.0033 |
28 | rs316413369 | 1537133 | T/C | 2.40E-01 | 4.56E-02 | 1.76E-07 | 279 | 0.66 | 0.0056 |
