Table 3 Positional candidate genes categorized by function for common detected SNPs from two methods.
From: Genetic Architecture and Candidate Genes Identified for Follicle Number in Chicken
Chr | SNP | Position | Candidate genes/Nearest genes | Location | Description |
|---|---|---|---|---|---|
28 | rs316444293 | 2342019 | TCF3 | Upstream 1027 bp | Transcription factor 3 |
28 | rs316038837 | 1947008 | Upstream 14 kb of AMH | Intergenic variant | Anti-Mullerian hormone |
28 | rs16210881 | 1829370 | LOC101748229 | Intron variant | Nuclear factor interleukin-3-regulated protein-like |
28 | rs313648246 | 2010929 | DOT1L | Intron variant | DOT1 like histone lysine methyltransferase |
28 | rs316105069 | 2123244 | SCAMP4 | Downstream 999 bp | Secretory carrier membrane protein 4 |
28 | rs318236639 | 1929393 | OAZ1 | Downstream 1549 bp | Ornithine decarboxylase antizyme 1 |
28 | rs314802132 | 1542976 | DUS3L | Upstream 4541 bp | Dihydrouridine synthase 3 like |
28 | rs313479236 | 1821752 | ZAP70 | Downstream 4223 bp | Zeta-chain (TCR) associated protein kinase 70 kDa |
28 | rs313972624 | 1732609 | MYO1F | Intron variant | Myosin IF |
28 | rs317337799 | 1754154 | ADAMTS10 | Intron variant | ADAM metallopeptiddase with thrombospondin type 1 motif, 10 |
28 | rs316358363 | 1626264 | ACSBG2 | Upstream 4223 bp | Acyl-CoA synthetase bubblegum family member 2 |
28 | rs14305824 | 2179908 | REXO1 | Upstream 2997 bp | RNA exonuclease 1 homolog |
28 | rs316367068 | 1524526 | NRTN | Upstream 4113 bp | Neurturin |
28 | rs312811524 | 1786822 | Downstream 40 kb of ADAMTS10 | Intergenic variant | ADAM metallopeptiddase with thrombospondin type 1 motif, 10 |
28 | rs13663720 | 1788269 | Upstream 7 kb of ANP32B | Intergenic variant | Acidic (leucine-rich) nuclear phosphoprotein 32 family, member B |
28 | rs312586874 | 1449431 | NMRK2 | Downstream 2995 bp | Nicotinamide riboside kinase 2 |
28 | rs16211274 | 1463378 | NMRK2 | Downstream 4803 bp | Nicotinamide riboside kinase 2 |
28 | rs318099911 | 2163700 | ABHD17A | Upstream 4844 bp | Abhydrolase domain containing 17 A |
28 | rs316574537 | 2432874 | SH3GL1 | Intron variant | SH3 domain containing GRB2 like 1, endophilin A2 |
28 | rs314231916 | 1709862 | ANP32B | Upstream 2156 bp | Acidic (leucine-rich) nuclear phosphoprotein 32 family, member B |
28 | rs314907214 | 1443055 | SNORD37 | Downstream 694 bp | Small nucleolar RNA SNORD37 |
17 | rs312873273 | 1366852 | RGS3 | Intron variant | Regulator of G-protein signaling 3 |
28 | rs16211139 | 1602011 | Upstream 15 kb of DUS3L | Intergenic variant | Dihydrouridine synthase 3 like |
28 | rs314643774 | 1910877 | Upstream 15 kb of OAZ1 | Intergenic variant | Ornithine decarboxylase antizyme 1 |
28 | rs315697880 | 1623888 | Downstream 5 kb of DUS3L | Intergenic variant | Dihydrouridine synthase 3 like |
28 | rs14306530 | 1499327 | FUT6 | Synonymous variant | Fucosyltransferase 6 |
28 | rs16211213 | 1541935 | — | Non-coding transcript variant | Novel lincRNA |
28 | rs316413369 | 1537133 | — | Non-coding transcript variant | Novel lincRNA |
