Table 1 Seven motifs of SSR loci in 16 species.

From: Genome-wide analysis of SSR and ILP markers in trees: diversity profiling, alternate distribution, and applications in duplication

Species

Monomer

Dimer

Trimer

Tetramer

Pentamer

Hexamer

Heptamer

All

Size (Mb)

Density

P. persica

27,034

40,294

23,975

31,782

12,441

178,105

58,671

372,302

219

1,700

S. babylonica

31,055

57,451

51,276

50,049

20,208

254,705

86,345

551,089

295

1,868

J. curcas

83,074

33,951

32,392

42,609

12,737

227,431

78,032

510,226

308

1,657

M. notabilis

111,688

72,963

42,208

48,430

24,611

279,875

128,953

708,728

312

2,272

T. cacao

32,673

35,792

30,515

38,622

14,538

250,827

80,076

483,043

334

1,446

P. trichocarpa

59,920

54,354

57,563

60,302

26,344

336,295

124,341

719,119

403

1,784

P. euphratica

63,381

65,147

118,408

82,122

29,200

432,937

153,442

944,637

480

1,968

P. dactylifera

35,953

61,436

49,823

55,589

21,096

324,903

103,674

652,474

547

1,193

A. trichopo

100,331

159,465

65,405

69,895

26,679

469,772

185,400

1,076,947

682

1,579

F. excelsior

109979

52,036

54,512

84,842

37,870

499,268

169,920

1,008,427

846

1,192

H. brasiliensis

78,165

103,931

107,094

154,575

69,316

827,752

280,723

1,621,556

1,362

1,191

E. guineensis

78, 323

105,403

85,834

108,984

43,820

747,818

265,081

1,435,263

1,485

967

G. biloba

356,257

893,397

319,060

747,079

99,851

3,423,774

1,065,480

6,904,898

10,220

676

P. abies

333,417

227,946

306,955

341,052

100,714

2,501,615

805,669

4,617,368

11,980

385

P. taeda

570,852

840,323

1,399,969

1,507,006

401,640

10,793,943

3,524,504

19,038,237

21,709

877

P. lambertiana

862,648

1,435,961

1,701,344

1,895,896

625,256

15,553,791

4,618,933

26,693,829

27,238

980

Total

2,856,427

4,239,850

4,446,333

5,318,834

1,566,321

37,102,811

11,729,244

67,259,820

78,420

 

Percentage

4.25%

6.30%

6.61%

7.91%

2.33%

55.16%

17.44%

100.00%