Figure 5
From: Dissecting the Genetic Basis of Local Adaptation in Soybean
Genome-wide environmental association results for soil percent silt. (a) Genome-wide view of association results for soil percent silt. A cluster of significant associations was identified on chromosome 15 across six soil depths. (b) Zoomed-in view of a 50 kb region around the significant marker BARC_1.01_Gm15_9988583_T_C, the most significant hit for soil percent silt. The Arabidopsis ortholog for the nearest gene, Glyma.15g127700, is Root Hair Defective 3 GTP-binding protein (RHD3). (c) Density plot of allele frequency distribution for Percent Silt. (d) Boxplot analysis indicates substantial variation among subpopulations for soil percent silt. (e) Geographic location of individuals with the “C” allele (gray) or “T” allele (gold) with jitter added to show overlapping samples. Maps were created with the RgoogleMaps 54.
