Table 3 Hydrogen bond partner and binding probability of Gln1 in NiSOD H1Q and His1 in wt. NiSOD derived from molecular dynamics simulations. Superscript letters indicate the respective NiSOD subunit.

From: New insights into the mechanism of nickel superoxide degradation from studies of model peptides

 

Oε1 Gln1 A

Nε2 Gln1 A

Nε2 His1 D

H-bond partner

Nε2 Gln13A

NH2 Arg47D

Oε1 Glu17D

Oγ Ser20D

O Val8A

Oε2 Glu17A

Oγ Ser20A

O Ile16A

H-bond probability

0.912

0.087

0.053

0.207

0.303

0.824

0.019

0.001