Table 1 Relative NLRP3 mRNA expression in baseline and stimulated THP-1 and ARPE-19 cells.

From: Issues with the Specificity of Immunological Reagents for NLRP3: Implications for Age-related Macular Degeneration

 

Vehicle

LPS

LPS + ATP

LPS + IL1α

LPS + IL1α + 7KCh

TNFα

Pam3CSK4

ox-LDL

LPS + TCDD

IL-17

THP-1 Veh

THP-1 (LPS + ATP)

Mean fold change

1.0

0.9

1.0

1.9

0.8

0.9

0.5

0.4

0.4

0.5

719

1019

SEM

0.0

0.3

0.4

1.0

0.7

0.6

0.3

0.3

0.2

0.2

25.3

62

Avg fold change exp #1

1.0

0.7

1.7

0.8

0.0

0.2

0.1

0.2

0.0

0.7

  

Avg fold change exp #2

1.0

0.5

0.4

1.0

0.3

0.3

0.5

0.1

0.4

0.1

744.8

1081.1

Avg fold change exp #3

1.0

1.5

0.8

3.9

2.1

2.1

0.9

1.0

0.6

0.7

694.3

957.2

 

Ct Values

Experiment 1 NLRP3

35.9

36.9

36.0

41.0

39.8

41.0

41.0

37.1

41.0

36.8

  

41.0

35.2

36.9

36.2

38.2

41.0

36.7

41.0

41.0

37.1

  

37.0

37.2

34.8

35.8

39.8

35.8

41.0

41.0

38.1

36.7

  

Exp.1 reference RNA

26.4

24.7

25.8

26.0

23.0

25.3

24.1

26.0

 

24.6

  

26.3

24.2

25.0

25.8

22.4

25.0

23.9

25.6

23.4

24.6

  
 

23.7

24.1

25.7

22.0

25.0

23.7

25.3

23.7

24.8

  

Experiment 2 NLRP3

36.5

37.1

37.3

41.0

38.6

41.0

37.1

41.0

41.0

41.0

30.9

30.6

36.9

41.0

37.0

37.0

39.4

36.8

41.0

41.0

41.0

41.0

31.2

31.1

37.1

36.7

41.0

36.3

38.7

41.0

37.1

41.0

41.0

41.0

30.2

30.2

Exp.2 reference RNA

18.3

18.7

18.6

19.5

18.6

19.4

18.9

19.2

21.0

18.8

21.4

21.9

18.2

18.6

18.6

19.5

19.0

19.4

19.0

19.1

21.0

18.9

22.0

22.3

18.2

18.6

18.6

19.5

18.7

19.4

 

19.1

21.1

18.8

21.4

21.7

Experiment 3 NLRP3

39.0

41.0

39.8

37.9

37.5

37.6

39.9

38.9

41.0

39.9

28.5

28.2

41.0

37.3

41.0

38.6

41.0

38.9

41.0

41.0

41.0

41.0

28.4

28.1

39.1

38.1

41.0

38.8

37.3

39.0

41.0

39.1

38.9

39.9

28.3

27.9

Exp.3 reference RNA

20.9

20.6

21.9

21.6

20.9

20.9

21.8

21.0

21.0

21.9

19.3

19.2

21.0

21.0

21.1

21.8

21.0

21.0

21.6

20.8

20.8

20.5

19.0

19.2

20.9

20.3

21.7

21.4

20.9

20.5

21.9

20.9

20.8

20.8

19.3

19.3

  1. Expression levels of NLRP3 mRNA measured in baseline and stimulated THP-1 and ARPE-19 cells were analyzed by RT-PCR. THP-1 cells were primed with LPS (10 μg/mL) plus ATP (5 mM) for 4 hours. ARPE-19 cells were stimulated with NLRP3-priming stimuli including LPS (10 μg/mL) alone, LPS (10 μg/mL) plus ATP (5 mM), LPS (10 μg/mL) plus TCDD (10 nM), LPS (20 μg/mL) plus IL-1α (25 ng/mL), LPS (20 μg/mL) plus IL-1α (25 ng/mL) plus 7-Ketocholesterol (10 μM), TNFα (10 ng/mL), IL-17α (100 ng/mL), Pam3CSK4 (300 ng/mL) for 24 hours and oxidized-LDL (500 μg/mL) for 48 hours. In ARPE-19 samples, expression levels are shown as fold changes in mRNA, relative to ARPE-19 vehicle from three biologically independent experiments (n = 3), that were performed in triplicates. Values expressed as mean fold changes in expression; 2−ΔΔCt (2−(ΔCt - ΔCtvehicle)) ± standard error of the mean (SEM) and threshold cycle (Ct) values.