Table 1 Confirmation of the putative linked SLAF-markers by the linked indels.

From: QTL analysis of cocoon shell weight identifies BmRPL18 associated with silk protein synthesis in silkworm by pooling sequencing

SLAF-marker1

Marker(Indel)2

Z_value(BSA)3

Z_value(Indel)4

p_value(BSA)5

p_value(Indel)6

Marker1453307

M1-1

4.931455366

2.203548955

8.16192E-07

0.02755608

Marker442659

M2-3

−4.465945963

−0.281508006

4.71822E-06

1.221679211

Marker647635*

M3-2

4.419819573

10.63175727

7.97157E-06

0

Marker634361*

M4-1

4.442610549

11.12072674

8.88739E-06

0

Marker1331376

M5-8

4.576942226

3.486750203

9.87833E-06

0.000488928

Marker374140*

M6-8

4.305839786

4.839172679

1.66353E-05

1.30381E-06

Marker193648*

M7-4

4.202642307

5.768207629

2.63817E-05

8.01191E-09

Marker683605*

M8-1

4.153511669

10.91958865

3.27412E-05

0

Marker644146*

M9-1

4.012944613

11.68560395

5.05806E-05

0

Marker299828

M10-5

4.025286803

−1.337554725

5.11301E-05

1.818958368

Marker802294

M11-4

4.050400274

1.130195268

5.69059E-05

0.258393953

Marker339700

M12-6

4.052928074

2.937266818

5.9966E-05

0.003311191

Marker703812*

M13-1

3.99351624

11.05130924

6.51006E-05

0

Marker628661*

M14-1

3.975424118

10.77284357

7.02539E-05

0

  1. *The markers with “*” are the positive linked SLAF-markers.
  2. 1The putative linked SLAF-markers;
  3. 2The Indel closely linked with the corresponding putative linked SLAF-markers for linkage confirmation;
  4. 3The Z_ value of the putative linked SLAF-markers from BSA SLAF sequencing;
  5. 4The Z_ value of the Indel confirmation;
  6. 5The p_ value of the putative linked SLAF-markers from BSA SLAF sequencing;
  7. 6The p_ value of the Indel confirmation.