Table 3 DOGMA based assessment of transcriptome completeness in SeagrassDB.

From: SeagrassDB: An open-source transcriptomics landscape for phylogenetically profiled seagrasses and aquatic plants

CDA size

SI

HU

LM

HO

CS

PI

PO

ZA

ZM

Found

1804

1811

1918

1473

1775

1707

1876

1676

1963

Expected

2017

2017

2017

2017

2017

2017

2017

2017

2017

Completeness

89.44

89.79

95.09

73.03

88

84.63

93.01

83.09

97.32

  1. Domain completeness of the assembled transcriptome was assessed using DOGMA version 2.00 (Dohmen et al.23) based on 965 single-domain CDAs (Conserved Domain Arrangements) and 1,052 multiple-domain CDAs across eukaryotes. DOGMA uses a set of the PFAM modeled evolutionary conserved set of the conserved protein domains. CDA Size: The size of the CDAs that were found to be conserved in the core species; Found: The number of these CDAs that were found; Expected: The number of expected CDAs (=all CDAs that were found to be conserved among the core species); %Completeness: Number of CDAs found (in percent). *Cymodocea serrulata (CS), Halodule uninervis (HU), Halophila ovalis (HO), Lemna minor (LM), Phyllospadix iwatensis (PI), Syringodium isoetifolium (SI), Zostera muelleri (ZM), Zostera marina (ZA) and Posidonia oceanica (PO).
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