Table 4 SNPs under directional selection among genetic groups detected by BAYESCAN (FDR = 0.05) and presenting significant association with the quantitative traits analyzed. Frequencies of the alternative alleles in each STRUCTURE group (K = 3).

From: Genome-wide association study reveals candidate genes influencing lipids and diterpenes contents in Coffea arabica L

SNP

Trait

Allele

Q1 frequency

Q2 frequency

Q3 frequency

S4_3861777

Ratio

G

0.71

0.85

0.02

S2_45775221

Kahweol

T

0.14

0.38

0.02

S11_29778697

Cafestol

T

0.13

0.27

0.02

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