Table 1 MicroRNAs differentially expressed between tumor and healthy adjacent tissue in patients diagnosed with HNSCC.

From: Tissue and serum microRNA profile of oral squamous cell carcinoma patients

miRNA

Healthy1

Tumor1

FC2

P Value

FDR3

Down-regulated

hsa-miR-204-5p

344.22 ± 91.11

17.55 ± 4

0.06

3.51E-07

1.28E-05

hsa-miR-375

8,515.05 ± 3731.04

1,026.33 ± 475.78

0.09

1.18E-08

1.50E-06

hsa-miR-4497

163.05 ± 43.63

38.93 ± 25.6

0.11

1.51E-05

0.0003

hsa-miR-1291

25.55 ± 6.65

4.97 ± 2.86

0.12

0.0006

0.0048

hsa-miR-4492

2,079.89 ± 449.49

623.76 ± 345.65

0.14

0.0004

0.0034

hsa-miR-3196

52.91 ± 11.59

15.47 ± 8.59

0.14

0.0015

0.0098

hsa-miR-6087

863.11 ± 228.33

197.8 ± 98.4

0.14

3.84E-05

0.0005

hsa-miR-4508

513.24 ± 82.05

165.24 ± 87.58

0.15

1.26E-04

0.0015

hsa-miR-4485-3p

1,123.14 ± 122.84

342.32 ± 174.79

0.16

5.28E-05

0.0006

hsa-miR-3195

169.22 ± 26.06

56.78 ± 31.03

0.16

0.0004

0.0034

hsa-miR-3687

132.19 ± 33.34

43.88 ± 27.87

0.17

0.0009

0.0067

hsa-miR-3648

43.98 ± 11.65

12.65 ± 6.93

0.17

0.0011

0.0079

hsa-miR-6510-3p

163.94 ± 74.97

20.35 ± 4.35

0.17

0.0007

0.0054

hsa-miR-4516

1635 ± 411.42

504.11 ± 268.88

0.17

0.0006

0.0048

hsa-miR-7704

660.64 ± 175.7

219.49 ± 129.52

0.18

0.0003

0.0033

hsa-miR-3656

622.23 ± 139.7

202.24 ± 92.26

0.21

0.0020

0.0122

hsa-let-7c-5p

4,812.94 ± 1102.21

1,129.95 ± 257.38

0.23

1.38E-07

1.17E-05

hsa-miR-4532

5,351.31 ± 955.34

1,714.59 ± 702

0.23

3.93E-05

0.0005

hsa-miR-4488

489.12 ± 102.88

187.6 ± 85.58

0.25

0.0056

0.0305

hsa-miR-99a-3p

20.09 ± 2.83

5.35 ± 1.5

0.25

0.0053

0.0296

hsa-miR-125b-5p

2,016.76 ± 257.48

619.77 ± 211.97

0.26

3.57E-05

0.0005

hsa-miR-139-5p

77.3 ± 10.43

21.21 ± 4.97

0.26

1.89E-05

0.0003

hsa-miR-3651

37.03 ± 7.24

12.6 ± 5.58

0.26

0.0068

0.0362

hsa-miR-125b-2-3p

632.01 ± 120.54

169.59 ± 28.9

0.27

3.77E-06

8.73E-05

hsa-miR-99a-5p

1,185.4 ± 41.23

395.01 ± 93.85

0.30

3.26E-05

0.0005

Up-regulated

hsa-miR-31-3p

1.16 ± 0.98

39.8 ± 7.41

77.11

2.91E-06

8.73E-05

hsa-miR-424-5p

2.14 ± 1.86

39.75 ± 7.37

71.59

9.64E-06

2.05E-04

hsa-miR-196b-5p

2.02 ± 1.75

30.15 ± 10.01

45.71

3.89E-05

0.0005

hsa-miR-877-5p

1.27 ± 1.09

18.72 ± 5.12

35.80

0.0003

0.0031

hsa-miR-7-5p

1.72 ± 1.56

12.84 ± 3.27

19.87

0.0004

0.0034

hsa-miR-135b-5p

4.14 ± 2.98

44.97 ± 7.22

17.78

2.62E-07

1.20E-05

hsa-miR-31-5p

128.27 ± 21.82

2,528.87 ± 1130.27

14.86

1.24E-10

3.17E-08

hsa-miR-142-3p

12.2 ± 6.43

94.3 ± 26.39

11.70

2.82E-07

1.20E-05

hsa-miR-187-3p

3.52 ± 1.93

25.4 ± 6.59

8.44

0.0003

0.0031

hsa-miR-19a-3p

6.74 ± 3.3

33.87 ± 10.76

7.43

0.0018

0.0114

hsa-miR-708-3p

4.06 ± 1.25

25.92 ± 3.89

6.34

3.45E-06

8.73E-05

hsa-miR-223-3p

63.71 ± 13.03

442.93 ± 139.65

6.16

2.24E-07

1.20E-05

hsa-miR-32-5p

5.49 ± 2.43

24.26 ± 6.04

4.91

0.0006

0.0046

hsa-miR-18a-5p

24.29 ± 5.7

123.25 ± 36.61

4.84

3.66E-06

8.73E-05

hsa-miR-301a-3p

9.17 ± 2.54

46.43 ± 12.17

4.52

0.0002

0.0021

hsa-let-7a-3p

23.56 ± 16.17

52.02 ± 10.75

4.32

0.0027

0.0164

hsa-miR-21-5p

11,577 ± 2360.39

40,506.05 ± 5524.39

3.56

2.58E-05

0.0004

hsa-miR-455-5p

18.77 ± 2.14

61.45 ± 8.19

3.12

0.0004

0.0034

hsa-miR-92b-3p

497.22 ± 94.34

1465.13 ± 210.46

3.02

0.0004

0.0034

hsa-miR-21-3p

1,366.33 ± 343.19

3,663.11 ± 527.37

2.90

0.0016

0.0107

hsa-miR-142-5p

816.58 ± 219.92

2,412.08 ± 695.48

2.64

0.0043

0.0254

hsa-miR-944

58.54 ± 12.98

146.36 ± 19.26

2.56

0.0053

0.0296

hsa-miR-20a-5p

87.07 ± 12.5

214.73 ± 26.33

2.41

0.0044

0.0257

  1. 1miRNAs are expressed as reads per million (rpm). miRNA with less than 3 rpm in less than 50% of the samples were removed from analysis.
  2. 2Fold change in Tumor compared to Healthy tissue.
  3. 3False discovery rate. Only miRNAs with FDR lower than 0.05 were considered as significantly regulated.