Table 5 Predicted targets for the differential novel miRNAs.

From: MiRNA-seq-based profiles of miRNAs in mulberry phloem sap provide insight into the pathogenic mechanisms of mulberry yellow dwarf disease

MiRNA-name

Putative GO process

Predicted target annotations in mulberry transcriptome data

mul-miRn21-3p

Signal transduction

Transducin/WD40 repeat-like superfamily protein

RNA processing

Tetratricopeptide repeat (TPR)-like superfamily protein

mul-miRn22-5p

Metabolic process

2-oxoglutarate dehydrogenase

mul-miRn23-5p

Cytokinin metabolic; Development

SOB five-like 2

Development; Auxin homeostasis; Gibberellic acid mediated signaling pathway

Lateral root primordium (LRP) protein-related

Transcription; Development; Gibberellin biosynthetic process

Integrase-type DNA-binding superfamily protein

Response to auxin stimulus

SAUR-like auxin-responsive protein family

Defense response

Disease resistance protein (TIR-NBS-LRR class) family

Unknown

Calcium-dependent lipid-binding family protein

Metabolic process

Cellulose synthase family protein

Unknown

TPR-like superfamily protein

Unknown

Transposable element gene

mul-miRn24-5p

Metabolic process

ATP-citrate lyase A-3

Membrane transport

Oligopeptide transporter 1

mul-miRn28-3p

Defence response

ADR1-like 1

mul-miRn29-5p

Ehylene mediated signaling pathway; Transcription regulation

Integrase-type DNA-binding superfamily protein

Secondary metabolitic process; Environmental responses

Cytochrome P450, family 96, subfamily A, polypeptide 5

Transcription regulation

Tudor/PWWP/MBT domain-containing protein

Defence response; Flavonoid biosynthetic process

2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein

Unknown

Transposable element gene

Defence response

Disease resistance protein

mul-miRn30-3p

Development; Environmental responses

PPR repeat-containing protein,

Signaling pathway

Serine/threonine-protein kinase-like protein CCR2

Metabolic process

Oxidoreductase family protein

Transcription regulation

SAP domain-containing protein

mul-miRn31-3p

Metabolic process; Development

ARPN | plantacyanin

Transcription regulation

SAC3/GANP/Nin1/mts3/eIF-3 p25-family protein

mul-miRn32-5p

Response to stress; Signaling pathway

U-box domain-containing protein kinase family protein

Signaling pathway

Leucine-rich repeat protein kinase family protein

Signaling pathway

Protein kinase superfamily protein

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