Table 2 Quantitative trait loci for heading date in the CR-RIL population detected using a composite interval mapping procedure.

From: Genetic interaction involving photoperiod-responsive Hd1 promotes early flowering under long-day conditions in rice

QTLs

Marker Interval

Physical size of QTL (Mb)

Positiona

LOD

AEb

PVEc

Increasing effectd

qHD1 CR

RM265-RM5389

0.536

136.3

2.5

−4.11

2.5

PSRR-1

qHD3 CR

RM3203-RM3372

0.659

3.0

20.5

−14.57

29.1

PSRR-1

qHD5 CR

RM1366-RM3322

1.346

25.2

3.6

−4.76

3.7

PSRR-1

qHD6 CR

RM276-RM8225

3.079

56.3

3.1

−5.05

3.7

PSRR-1

qHD7 CR

RM3555-RM172

1.671

114.5

10.1

9.09

13.7

Cypress

qHD8 CR

RM1376-RM1111

1.605

24.8

5.1

−6.21

6.8

PSRR-1

     

Totale

47.2

 
  1. aPeak position of the QTL on the linkage map.
  2. bAdditive effects of ‘Cypress’ allele.
  3. cPhenotypic variation (%) explained by each QTL.
  4. dSource of allele increasing the trait value.
  5. eEstimate of the total phenotypic variation explained by the QTL from a multiple QTL model fit in QTL Cartographer43.
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