Table 1 Differentially expressed common genes after shikonin treatment by MCF-7, SK-BR-3, and MDA-MB-231 cells. (log2 ratio).
From: RNA-seq transcriptome analysis of breast cancer cell lines under shikonin treatment
Genes | Entrez ID | MCF-7 | SK-BR-3 | MDA-MB-231 |
|---|---|---|---|---|
RMRP | 6023 | Infinity | Infinity | Infinity |
HSPA6 | 3310 | 8.48 | Infinity | 8.41 |
HMOX1 | 3162 | 6.18 | 5.60 | 2.31 |
PGF | 5228 | 5.32 | 3.83 | 1.01 |
HSPA1A | 3303 | 3.92 | 6.11 | 4.69 |
HSPA1B | 3304 | 3.75 | 6.12 | 4.04 |
ATF3 | 467 | 3.69 | 2.03 | 4.08 |
DNAJB1 | 3337 | 3.37 | 4.70 | 3.51 |
OSGIN1 | 29948 | 3.19 | 2.79 | 1.36 |
TNFSF9 | 8744 | 3.03 | 2.28 | 3.91 |
PPP1R15A | 23645 | 2.84 | 2.89 | 2.06 |
ARC | 23237 | 2.70 | 2.84 | Infinity |
MIR22,MIR22HG | 407004 | 2.64 | 4.00 | 2.09 |
SNAI1 | 6615 | 2.64 | 2.06 | 4.52 |
RN7SK | 125050 | 2.54 | 1.01 | Infinity |
UBC | 7316 | 2.53 | 2.40 | 1.02 |
IER5 | 51278 | 2.42 | 1.21 | 1.99 |
MAFF | 23764 | 2.19 | 2.28 | 1.33 |
ZFAND2A | 90637 | 2.12 | 4.07 | 2.99 |
SESN2 | 83667 | 2.00 | 1.28 | 1.22 |
CDKN1A | 1026 | 1.91 | 3.56 | 2.19 |
HSPH1 | 10808 | 1.91 | 2.73 | 1.25 |
BAG3 | 9531 | 1.89 | 3.68 | 1.33 |
IDI2-AS1 | 55853 | 1.70 | 1.54 | Infinity |
SIK1 | 150094 | 1.61 | 1.00 | 1.30 |
DUSP2 | 1844 | 1.60 | 3.01 | 5.32 |
DUSP1 | 1843 | 1.55 | 2.88 | 1.20 |
GADD45G | 10912 | 1.53 | 2.42 | 3.17 |
PIM1 | 5292 | 1.43 | 2.00 | 1.09 |
MAP1LC3B | 81631 | 1.39 | 1.75 | 1.17 |
SLC25A25 | 114789 | 1.34 | 1.51 | 1.26 |
OSER1 | 51526 | 1.34 | 1.80 | 1.61 |
TSPYL2 | 64061 | 1.32 | 1.41 | 1.41 |
RND3 | 390 | 1.30 | 2.34 | 1.06 |
MAP1LC3B2 | 643246 | 1.24 | 1.31 | 1.34 |
CSRNP1 | 64651 | 1.06 | 2.25 | 1.79 |
RN7SL1 | 6029 | −1.22 | 1.15 | 1.32 |
ETAA1 | 54465 | −1.45 | −1.15 | −1.68 |
