Table 2 Allele frequencies and association with resistance measured by odds ratios for the four candidate SNPs in populations from Kenya and Uganda in which reproducibility was tested.

From: Candidate-gene based GWAS identifies reproducible DNA markers for metabolic pyrethroid resistance from standing genetic variation in East African Anopheles gambiae

SNP in gene

Populations genotyped

Total allele count

Mean resistant allele frequency (st. dev)

Mean odds ratio (st. dev)

Cyp4j5

7

1370

0.61 (0.13)

2.94 (1.10)

Vgsc

7

1068

0.84 (0.22)

3.59 (3.71)

Coeae1d

5

738

0.53 (0.04)

1.93 (0.87)

Cyp4j10

3

502

0.47 (0.05)

1.04 (0.24)

  1. Standard deviations are measured across populations.
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