Table 2 Copy number variation in the tumor exome.

From: Genomics of a pediatric ovarian fibrosarcoma. Association with the DICER1 syndrome

Gene

Effect

Genotype

ARID1B

Deletion

0:−1

BRAF

Amplification

3:AAB

CASP8

Amplification

4:AAAB

EZH2

Amplification

3:AAB

FGFR2

Deletion

0:−1

IDH1

Amplification

3:AAB

MAP2K4

Deletion

0:−1

MET

Amplification

3:AAB

MLL3

Amplification

3:AAB

MYC

Amplification

3:AAB

NCOR1

Amplification

8:AAAAAABB

NFE2L2

Amplification

3:AAB

PRDM1

Deletion

0:−1

SF3B1

Amplification

4:AAAB

SMO

Amplification

3:AAB

TNFAIP3

Deletion

0:−1

TP53

Deletion

0:−1

  1. Genotype: Allele number/Allele genotype. NC: Not calculated.