Table 1 Summary of next-generation sequencing results at the onset of bloodstream infection.
Patient ID | Sequence depth (reads) | Bacteria isolated from blood culture | Reads (per million reads)* | Dominant bacteria by NGS (species)** | Reads (per million reads) * |
|---|---|---|---|---|---|
B1 | 9,895,348 | Escherichia coli | 2,575 | Escherichia coli | 2,575 |
B2 | 9,753,018 | Capnocytophaga sputigena | 0.3 | Delftia sp. strain Cs1-4 | 179 |
B3 | 21,983,948 | Streptococcus oralis/mitis | 444/6 | Streptococcus mitis | 444 |
B4 | 32,895,328 | Stenotrophomonas maltophilia | 267 | Stenotrophomonas maltophilia | 267 |
B5 | 10,166,160 | Staphylococcus aureus | 7 | Streptococcus pyogenes | 223 |
B6 | 22,769,288 | Acinetobacter ursingii † | 1 | Moraxella osloensis | 4 |
B7 | 16,968,966 | Stenotrophomonas maltophilia | 1,415 | Stenotrophomonas maltophilia | 1,415 |
B8 | 4,793,796 | Streptococcus oralis/mitis | 7/3 | Pseudomonas stutzeri | 172 |
B9 | 24,026,704 | Bacillus cereus | 54 | Bacillus anthracis | 80 |
B10 | 20,027,612 | Sphingomonas paucimobilis | 25 | Sphingobium sp. strain TKS | 34 |
B11 | 9,305,716 | Staphylococcus lugdunensis † | 36 | Staphylococcus epidermidis | 25 |
B12 | 17,397,938 | Staphylococcus epidermidis | 27,719 | Staphylococcus epidermidis | 27,719 |
