Table 1 Genome features of survival strains after DSB induction at IKI-L in the WT and NHEJ- contexts.
From: Genome plasticity is governed by double strand break DNA repair in Streptomyces
Strain | Conformationa | Deletion (kb) | Duplication (kb) | Insertion (kb) | Amplificationb | Predicted genome size (Mb)c | ||
|---|---|---|---|---|---|---|---|---|
Size of the AUD (kb) | Estimated copy number | Estimated total size (kb) | ||||||
WT1 | Circular (6 f) | 876 | 767 | 9.7 | — | 8.20 | ||
WT2 | Circular (6c) | 785 | 864 | — | — | 8.38 | ||
WT4 | Circular (6d) | 827 | 761 | — | — | 8.23 | ||
WT6 | Circular (6e) | 1,140 | 498 | — | 14.7 | 590 | 8,7 | ~16.40 |
WT17 | Linear | 481 | 829 | — | — | 8.65 | ||
WT18 | Circular (6d) | 940 | 701 | — | — | 8.06 | ||
∆kuA1 | Circular (6 g) | 984 | 665 | — | — | 7.98 | ||
∆kuA6 | Circular (6a) | 683 | — | — | — | 7.62 | ||
∆kuA12 | Circular (6e) | 1,140 | 498 | — | 14.7 | 840 | 12,3 | ~20.00 |
∆kuA13 | Linear | 481 | 829 | — | — | 8.65 | ||
∆kuA14 | Circular (6c) | 800 | 783 | — | — | 8.28 | ||
∆kuA17 | Linear | 481 | 829 | — | — | 8.65 | ||
∆ligCD6 | Circular (6b) | 1,297 | — | 18.8 | — | 7.02 | ||
∆ligCD7 | Circular (6e) | 1,097 | 522 | — | 32.8 | 325 | 10,7 | ~18.40 |
∆ligCD9 | Circular (6e) | 1,140 | 498 | — | 14.7 | 820 | 12,1 | ~20.00 |
∆ligCD11 | Linear | 481 | 829 | — | — | 8.65 | ||
∆ligCD16 | Circular (6c) | 785 | 864 | — | — | 8.38 | ||
∆ligCD19 | Circular (6a) | 2,116 | — | — | — | 6.18 | ||
