Table 1 Satellite repeats investigated in this study. Novel satellite repeats are numbered with the prefix “VfSat”; references to previously described repeats are given in Notes. Names in square brackets refer to homologous repeats that were partially characterized by Novák et al.28. The column “ChIP-seq” provides ChIP/input ratios; the values of significant enrichment are highlighted and supplemented with repeat localization determined by FISH. Sequences of all newly identified satellites are provided in Supplementary Data S10.

From: Satellite DNA in Vicia faba is characterized by remarkable diversity in its sequence composition, association with centromeres, and replication timing

Satellite

monomer [bp]

Genomic abundance

Sequence characteristics

ChIP-seq (centromere)

Notes

[%]

[Mbp/1 C]

% AT

max A/T

max C/G

max Pu/Py

VfSat1

191

2.723

365.1

75.9

1.07

1.88

1.22

1.1

[Vf_TA_11]; similarity to TR-9 from P. sativum

FokI

59 / 57

2.322

311.4

59.3

1.44

2.00

1.11

1.0

37

VfSat2

~26

1.292

173.2

71.4

2.60

5.00

2.00

0.4

 

VfSat3

702

0.329

44.1

68.1

1.24

1.13

1.21

0.3

[Vf_TA_39]

TIII15

58

0.222

29.8

53.4

1.39

2.86

1.90

1.9

40

VfSat4

38

0.199

26.7

73.7

1.80

2.33

1.92

0.6

similarity to VicTR-B

VfSat5

687

0.187

25.1

77.6

1.16

1.19

1.07

0.3

 

pVf7

169

0.182

24.4

55

1.07

1.00

1.04

0.3

38

VfSat6

50

0.132

17.6

64

1.91

1.57

1.78

103.6 (CEN1)

similarity to TR-5 from P. sativum

VfSat7

44

0.102

13.7

70.5

1.21

1.17

1.2

103.2 (CEN1)

 

VfSat8

2033

0.061

8.1

71.7

1.68

1.03

1.46

91.3 (CEN4)

 

VfSat9

963

0.055

7.4

77.6

1.02

1.77

1.00

0.2

 

VfSat10

1762

0.042

5.7

74.7

1.08

1.27

1.00

41.2 (CEN1)

 

VfSat11

1619

0.040

5.3

75.7

1.08

1.23

1.01

0.3

 

VfSat12

1004

0.038

5.1

74.2

1.12

1.27

1.02

0.2

 

VfSat13

47

0.036

4.8

68.1

2.56

1.14

1.76

149.2 (CEN5)

 

VfSat14

888

0.035

4.7

75.6

1.06

1.33

1.02

0.3

 

VfSat15

942

0.035

4.7

76.5

1.11

1.03

1.08

0.3

similarity to TR-20 from P. sativum

VfSat16

1712

0.038

5.1

65.1

1.20

1.00

1.27

109.9 (CEN6)

[Vf_TA_157]

VfSat17

781

0.031

4.2

75

1.11

1.10

1.06

0.4

 

VfSat18

1172

0.031

4.2

79.7

1.11

1.03

1.08

0.3

 

VfSat19

1345

0.024

3.3

80.2

1.01

1.35

1.07

0.2

 

VfSat20

924

0.022

3

74.5

1.23

1.29

1.24

0.7

 

VfSat21

1057

0.017

2.3

74.3

1.02

1.35

1.10

0.2

 

VfSat22

1834

0.016

2.2

71.8

1.25

1.22

1.11

0.3

 

VfSat23

1325

0.008

1.1

73.3

1.17

1.41

1.18

81.9 (CEN2)

 
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