Table 1 The number of programmed cell death (PCD) genes and enrichment analysis.

From: Pan-cancer analysis of somatic mutations and transcriptomes reveals common functional gene clusters shared by multiple cancer types

 

No. of genes

No. of PCD genes

No. of type 1 PCD genes

No. of type 2 PCD genes

No. of type 3 PCD genes

Cluster 1

342

0

0

0

0

Cluster 2

536

13

5

7

6

Cluster 3

69

1

0

0

1

Cluster 4

158

0

0

0

0

Cluster 5

151

6

6***

0

1

Cluster 6

521

28**,***

19**,***

16**,***

8

Cluster 7

399

29**,***

18**,***

18**,***

6

Cluster 8

857

49**,***

36**,***

28**,***

10

Cluster 9

38

4**,***

1

3**,***

0

Clusters

2,219

79*

50*

38*

21

Not in clusters

4,597

124

64

43

37

Network

6,816

203*

114*

81*

58*

Not in network

50,472

113

28

50

41

Pan-cancer-wide selected genes

4,546

43*

19*

15

20*

Non-pan-cancer-wide selected genes

52,742

273

123

116

79

  1. *PCD genes were enriched in genes in clusters, networks, and PSGs compared to other genes not in clusters, networks, or PSGs.
  2. **PCD genes were enriched compared to other genes in clusters.
  3. ***PCD genes were enriched compared to other genes in networks.