Figure 4
Pathways more differentially activated between the lines within each treatment group at 2 and 6 days post infection. The Fayoumis and Leghorns were directly compared within each dpi and challenge group. The resulting differentially expressed genes with FDR <0.10 were used as input into IPA for pathway analysis. Contrasts from 10 dpi were removed because no pathways were significant. Heat map shows pathways predicted to be relatively more activated in the Fayoumi (orange) and Leghorn (blue). The more intense a square in the heat map, the higher the z-score and prediction confidence. White squares represent contrasts with no or too few DEG within that pathway to make a prediction (z-score = 0).
