Table 1 Population information and summary of levels of genetic diversity of Cypripedium japonicum based on ISSR/SCoT analysis.

From: Genetic diversity in the endangered terrestrial orchid Cypripedium japonicum in East Asia: Insights into population history and implications for conservation

Country

Province or Prefecture

Altitude (m)

n

PPB(%)

Na [PA]

N e

HE (SD)

SI (SD)

Region

ISSR

SCoT

ISSR

SCoT

ISSR

SCoT

ISSR

SCoT

ISSR

SCoT

ISSR

SCoT

Population

CHINA

  Eastern

              

  DB (Dabieshan)

Anhui

200

5

5

7.7

7.8

1.08 [3]

1.08 [3]

1.05

1.05

0.031 (0.110)

0.029 (0.103)

0.045 (0.159)

0.044 (0.152)

  HS (Huangshan)

Anhui

1000

12

12

7.7

9.1

1.08 [5]

1.09 [0]

1.02

1.07

0.016 (0.066)

0.040 (0.128)

0.027 (0.103)

0.057 (0.182)

  LS (Lushan)

Jiangxi

1200

3

3

1.3

3.9

1.01 [1]

1.04 [3]

1.01

1.03

0.006 (0.050)

0.017 (0.087)

0.008 (0.072)

0.025 (0.124)

  TM (Tianmushan)

Zhejiang

1100

27

27

11.5

13.0

1.12 [1]

1.13 [5]

1.02

1.04

0.017 (0.052)

0.027 (0.091)

0.032 (0.093)

0.044 (0.137)

  Mean

    

7.1

8.5

1.07 [2.50]

1.09 [2.75]

1.03

1.05

0.018 (0.010)

0.028 (0.009)

0.028 (0.015)

0.043 (0.013)

 Central

  BT (Baotianman)

Henan

1000

21

21

1.3

5.2

1.01 [0]

1.05 [0]

1.01

1.03

0.004 (0.035)

0.017 (0.075)

0.006 (0.055)

0.026 (0.114)

  SN (Shennongjia)

Hubei

1160

22

23

19.2

18.2

1.19 [5]

1.18 [4]

1.06

1.06

0.039 (0.101)

0.041 (0.101)

0.066 (0.156)

0.068 (0.158)

  Mean

    

10.3

11.7

1.10 [2.50]

1.12 [2.00]

1.03

1.05

0.022 (0.025)

0.029 (0.017)

0.036 (0.042)

0.047 (0.029)

 Western

  FP (Foping)

Shaanxi

1260

21

21

24.4

24.7

1.24 [3]

1.24 [1]

1.10

1.12

0.062 (0.132)

0.074 (0.147)

0.098 (0.197)

0.115 (0.219)

  JF (Jinfo)

Chongqing

1000

8

8

15.4

18.2

1.15 [6]

1.18 [3]

1.08

1.12

0.050 (0.125)

0.071 (0.158)

0.077 (0.187)

0.104 (0.228)

  SZ (Sangzhi)

Hunan

1000

21

21

20.5

23.4

1.21 [1]

1.23 [4]

1.09

1.08

0.059 (0.128)

0.054 (0.113)

0.092 (0.194)

0.089 (0.177)

  WX (Wenxian)

Gansu

1200

20

20

12.8

13.0

1.13 [2]

1.13 [2]

1.05

1.05

0.034 (0.104)

0.035 (0.100)

0.053 (0.155)

0.055 (0.154)

  ZP (Zhenping)

Shaanxi

1230

20

na

12.8

na

1.13 [1]

na [na]

1.06

na

0.039 (0.113)

na

0.060 (0.168)

na

  Mean

    

17.2

19.8

1.17 [2.60]

1.20 [2.50]

1.08

1.09

0.049 (0.012)

0.058 (0.018)

0.076 (0.020)

0.091 (0.026)

  Mean in China

    

12.2

13.7

1.12 [2.55]

1.14 [2.50]

1.05

1.07

0.031 (0.020)

0.040 (0.020)

0.051 (0.030)

0.063 (0.031)

KOREA

  Ka (Hwacheon)

Gangwon

590

23

23

1.6

2.6

1.03 [0]

1.03 [0]

1.01

1.01

0.008 (0.051)

0.007 (0.046)

0.012 (0.077)

0.012 (0.074)

  Kb (Pocheon)

Gyeonggi

520

20

18

5.1

5.2

1.05 [1]

1.05 [0]

1.01

1.04

0.007 (0.034)

0.022 (0.096)

0.013 (0.061)

0.032 (0.139)

  Mean in Korea

    

3.4

3.9

1.04 [0.50]

1.04 [0.00]

1.01

1.03

0.008 (0.000)

0.015 (0.010)

0.013 (0.001)

0.022 (0.014)

JAPAN

  Ha (Niikappu)

Hokkaido

50

7

7

3.9

3.9

1.04 [2]

1.04 [0]

1.02

1.03

0.013 (0.067)

0.015 (0.077)

0.019 (0.100)

0.022 (0.112)

  Hc (Yotsukaido)

Chiba

30

19

19

7.7

9.1

1.08 [0]

1.09 [0]

1.04

1.03

0.025 (0.093)

0.021 (0.070)

0.038 (0.139)

0.035 (0.115)

  Ho (Hokuto)

Hokkaido

70

14

15

7.7

9.1

1.08 [0]

1.09 [2]

1.05

1.05

0.029 (0.106)

0.031 (0.108)

0.042 (0.153)

0.046 (0.157)

  Ra (Nakatosa)

Kochi

400

22

22

5.1

7.8

1.05 [1]

1.08 [0]

1.03

1.05

0.017 (0.082)

0.030 (0.111)

0.025 (0.118)

0.044 (0.159)

  Mean in Japan

    

6.1

7.5

1.06 [0.75]

1.08 [0.50]

1.04

1.04

0.021 (0.007)

0.024 (0.008)

0.031 (0.011)

0.037 (0.011)

  Mean (total)

  

16.8

15.6

9.7

10.9

1.10 [1.88]

1.11 [1.69]

1.04

1.05

0.027 (0.018)

0.033 (0.019)

0.042 (0.029)

0.051 (0.030)

  Species level

  

285

265

57.7

61.0

1.58

1.61

1.16

1.24

0.104 (0.155)

0.145 (0.188)

0.169 (0.227)

0.224 (0.266)

  1. Abbreviations: n, sample size; PPB (%), percentage of polymorphic bands; Na, observed number of alleles; PA, number of private alleles; Ne, average effective number of alleles per locus; HE, Nei’s gene diversity index; SD, standard deviation; SI, Shannon’s information index; na, not available.