Table 1 Summary of chloroplast and 45SnrDNA assemblies from 28 Brassica and Raphanus genotypes.
From: Re-exploration of U’s Triangle Brassica Species Based on Chloroplast Genomes and 45S nrDNA Sequences
Organism and genome | Genotype IDa | Genome size (Mb) | Total reads (Mb) | Chloroplast genome | 45SnrDNA | ||||
|---|---|---|---|---|---|---|---|---|---|
Length (bp) | Copy number (x)b | Accession number | Length (bp) | Copy number (x)b | Accession number | ||||
B. rapa (A) | A1 | 529 | 1,557 | 153,483 | 378 | KX681647 | 5,818 | 3,216 | KX709342 |
A2 | 529 | 1,214 | 153,482 | 305 | KX681648 | 5,818 | 3,770 | KX709343 | |
A3 | 529 | 1,352 | 153,482 | 363 | KX681649 | 5,818 | 3,872 | KX709344 | |
A4 | 529 | 1,293 | 153,037 | 496 | KX681650 | 5,818 | 4,183 | KX709345 | |
B. nigra (B) | B1 | 632 | 1,532 | 153,633 | 378 | KT878383 | 5,831 | 1,819 | KX709346 |
B2 | 632 | 1,632 | 153,641 | 221 | KX681651 | 5,831 | 1,667 | KX709347 | |
B3 | 632 | 1,489 | 153,623 | 323 | KX681652 | 5,831 | 1,324 | KX709348 | |
B4 | 632 | 1,631 | 153,642 | 244 | KX681653 | 5,831 | 1,571 | KX709349 | |
B. oleracea (C) | C1 | 630 | 1,489 | 153,364 | 278 | KX681654 | 5,811 | 2,873 | KX709350 |
C2 | 630 | 1,312 | 153,364 | 510 | KX681655 | 5,848 | 1,384 | KX709351 | |
C3 | 630 | 1,611 | 153,364 | 285 | KX681656 | 5,818 | 2,768 | KX709352 | |
C4 | 630 | 2,115 | 153,363 | 347 | KX681657 | 5,819 | 1,957 | KX709353 | |
R. sativus (R) | R1 | 530 | 1,467 | 153,372 | 264 | KX681658 | 5,816 | 3,812 | KX709354 |
R2 | 530 | 1,487 | 153,444 | 412 | KX681659 | 5,816 | 2,042 | KX709355 | |
R3 | 530 | 1,440 | 153,376 | 393 | KX681660 | 5,819 | 4,174 | KX709356 | |
R4 | 530 | 1,470 | 153,370 | 343 | KX681661 | 5,823 | 4,614 | KX709357 | |
B. juncea (AB) | AB1-A | 1,068 | 1,469 | 153,483 | 779 | KX681662 | 5,818 | 2,412 | KX709358 |
AB1-B | 5,831 | 1,589 | KX709359 | ||||||
AB2-A | 1,068 | 1,352 | 153,483 | 358 | KX681663 | 5,818 | 1,883 | KX709360 | |
AB2-B | 5,831 | 690 | KX709361 | ||||||
AB3-A | 1,068 | 1,528 | 153,490 | 495 | KX681664 | 5,818 | 2,192 | KX709362 | |
AB3-B | 5,831 | 1,041 | KX709363 | ||||||
AB4-A | 1,068 | 1,549 | 153,483 | 338 | KX681665 | 5,818 | 3,449 | KX709364 | |
AB4-B | 5,831 | 1,190 | KX709365 | ||||||
B. napus (AC) | AC1-A | 1,130 | 1,534 | 153,452 | 630 | KX681666 | 5,831 | 1,445 | KX709366 |
AC1-C | 5,818 | 689 | KX709367 | ||||||
AC2-A | 1,130 | 1,401 | 153,429 | 890 | KX681667 | 5,831 | 1,169 | KX709368 | |
AC2-C | 5,819 | 879 | KX709369 | ||||||
AC3-A | 1,130 | 1,401 | 153,429 | 925 | KX681668 | 5,817 | 1,009 | KX709370 | |
AC3-C | 5,832 | 865 | KX709371 | ||||||
AC4-A | 1,130 | 1,579 | 153,453 | 366 | KX681669 | 5,831 | 982 | KX709372 | |
AC4-C | 5,818 | 741 | KX709373 | ||||||
B. carinata (BC) | BC1-B | 1,284 | 2,156 | 153,636 | 762 | KX681670 | 5,818 | 4,223 | KX709374 |
BC1-C | 5,818 | 2,409 | KX709375 | ||||||
BC2-B | 1,284 | 1,457 | 153,636 | 919 | KX681671 | 5,818 | 5,865 | KX709376 | |
BC2-C | 5,818 | 3,453 | KX709377 | ||||||
BC3-B | 1,284 | 1,710 | 153,641 | 913 | KX681672 | 5,818 | 2,813 | KX709378 | |
BC3-C | 5,817 | 1,836 | KX709379 | ||||||
BC4-B | 1,284 | 1,511 | 153,636 | 540 | KX681673 | 5,818 | 4,791 | KX709380 | |
BC4-C | 5,818 | 2,551 | KX709381 | ||||||
