Table 1 Overview of raw and processed reads over sequencing time.
From: Nanopore sequencing technology: a new route for the fast detection of unauthorized GMO
Raw data | 1 h | 2 h | 4 h | 8 h | 16 h | 24 h |
|---|---|---|---|---|---|---|
Total reads | 207417 | 425407 | 677698 | 961985 | 1356358 | 1422774 |
Mapped reads (%) | 99.08 | 99.12 | 99.09 | 99.05 | 98.98 | 98.95 |
Error rate (%) | 12.68 | 12.57 | 12.51 | 12.52 | 12.66 | 12.74 |
Minimal read size (bp) | 100 | 100 | 100 | 100 | 100 | 100 |
Maximal read size (bp) | 4458 | 4458 | 4458 | 4475 | 4475 | 4475 |
Average read size (bp) | 511 | 509 | 508 | 505 | 501 | 499 |
Processed data | 1 h | 2 h | 4 h | 8 h | 16 h | 24 h |
Total reads | 24874 | 52139 | 84685 | 121185 | 173529 | 181544 |
Mapped reads (%) | 99.13 | 99.09 | 99.04 | 99.02 | 99.00 | 99.00 |
Error rate (%) | 2.92 | 2.83 | 2.84 | 2.83 | 2.84 | 2.85 |
Minimal read size (bp) | 701 | 701 | 701 | 701 | 701 | 700 |
Maximal read size (bp) | 2780 | 2790 | 2811 | 2817 | 2832 | 2852 |
Average read size (bp) | 995 | 997 | 996 | 995 | 992 | 990 |