Table 1 Overview of raw and processed reads over sequencing time.

From: Nanopore sequencing technology: a new route for the fast detection of unauthorized GMO

Raw data

1 h

2 h

4 h

8 h

16 h

24 h

Total reads

207417

425407

677698

961985

1356358

1422774

Mapped reads (%)

99.08

99.12

99.09

99.05

98.98

98.95

Error rate (%)

12.68

12.57

12.51

12.52

12.66

12.74

Minimal read size (bp)

100

100

100

100

100

100

Maximal read size (bp)

4458

4458

4458

4475

4475

4475

Average read size (bp)

511

509

508

505

501

499

Processed data

1 h

2 h

4 h

8 h

16 h

24 h

Total reads

24874

52139

84685

121185

173529

181544

Mapped reads (%)

99.13

99.09

99.04

99.02

99.00

99.00

Error rate (%)

2.92

2.83

2.84

2.83

2.84

2.85

Minimal read size (bp)

701

701

701

701

701

700

Maximal read size (bp)

2780

2790

2811

2817

2832

2852

Average read size (bp)

995

997

996

995

992

990

  1. This following statistics were collected: read number, percentage of reads mapped to the reference sequences and related error rate, and minimum, maximum and average read size. Raw data: read data after removal of PCR adapters; Processed data: read data after removal of PCR adapters and retaining sequences of 100 bp or longer, error correction and quality trimming (see section “Materials and Methods”).