Table 14 Differentially expressed lncRNAs in early hepatocellular carcinoma vs healthy patient’s tissue samples (FDR < 0.05).

From: Non-coding RNAs in Various Stages of Liver Disease Leading to Hepatocellular Carcinoma: Differential Expression of miRNAs, piRNAs, lncRNAs, circRNAs, and sno/mt-RNAs

lncRNA ID

Chromosome

Fold change

FDR

lnc-CRK-3:2

17

6384.96

9.03E-05

lnc-GCNT1-4:6

9

289.82

1.66E-08

lnc-GCNT1-4:5

9

269.34

1.66E-08

HAGLR:1

2

251.27

3.02E-03

lnc-GCNT1-4:2

9

240.21

1.33E-07

lnc-GCNT1-4:3

9

237.82

1.33E-07

lnc-GCNT1-4:4

9

237.45

1.33E-07

lnc-UBC-3:1

12

202.61

4.21E-05

lnc-TRIM27-18:1

6

170.61

4.91E-03

lnc-AC106017.1.1-2:1

17

51.74

2.12E-05

lnc-FNBP1L-2:1

1

24.51

2.18E-03

lnc-GNGT2-1:2

17

23.07

4.17E-04

LINC00273:8

16

20.55

1.80E-02

lnc-AC102948.1.1-4:1

17

15.69

8.11E-05

LIMD1-AS1:6

3

15.67

3.53E-04

lnc-PRRC2C-5:1

1

15.57

1.02E-03

lnc-ZNF391-5:2

6

14.67

1.26E-03

lnc-GPR39-7:2

2

11.36

1.21E-03

lnc-ZNF133-3:1

20

5.79

3.20E-02

lnc-SAG-4:1

2

4.05

1.22E-02

MIR22HG:35

17

2.84

1.32E-02

MIR22HG:18

17

2.84

1.32E-02

MIR22HG:24

17

2.84

1.16E-02

MIR22HG:47

17

2.83

1.19E-02

FTX:29

X

−1.01

4.72E-02

lnc-SLC25A30-3:1

13

−1.61

4.56E-02

LINC-PINT:28

7

−1.66

4.39E-02

lnc-VMP1-3:3

17

−1.70

3.20E-02

LINC-PINT:29

7

−1.74

3.44E-02

lnc-C9orf100-1:1

9

−1.90

3.30E-02

lnc-RPL13A-1:5

19

−1.97

3.73E-02

LINC00472:10

6

−1.98

2.50E-02

lnc-SNURF-1:17

15

−1.99

4.63E-02

SNHG16:42

17

−2.01

2.10E-02

lnc-KIF20B-3:1

10

−2.02

3.04E-02

lnc-ZNF169-7:7

9

−2.07

2.64E-02

MIR193BHG:18

16

−2.12

2.17E-02

lnc-FPR2-1:35

19

−2.27

2.20E-02

LINC00324:3

17

−2.30

1.37E-02

lnc-SNAPC5-4:3

15

−2.35

2.63E-02

lnc-SLC15A4-24:1

12

−2.36

1.32E-02

lnc-RP4-695O20__B.10.1-3:9

22

−2.36

1.01E-02

lnc-RP4-695O20__B.10.1-3:12

22

−2.37

9.86E-03

lnc-RP4-695O20__B.10.1-3:10

22

−2.37

9.86E-03

SNHG1:4

11

−2.41

1.50E-02

SNHG1:44

11

−2.41

1.50E-02

lnc-MON2-2:8

12

−2.43

1.19E-02

lnc-PLA2G1B-2:3

12

−2.45

2.44E-02

lnc-MON2-2:10

12

−2.45

1.10E-02

lnc-MON2-2:2

12

−2.45

1.13E-02

lnc-SYT10-3:5

12

−2.46

1.38E-02

lnc-NEMF-1:4

14

−2.49

1.75E-02

lnc-CUL1-5:1

7

−2.58

1.09E-02

lnc-TRIM52-2:1

5

−2.62

9.07E-03

lnc-ANKRD34B-4:2

5

−2.68

9.57E-03

MIR210HG:7

11

−2.75

1.99E-02

LINC00273:1

16

−2.89

1.49E-03

UBA6-AS1:26

4

−2.97

3.85E-03

lnc-SNURF-1:73

15

−3.03

1.67E-02

lnc-LRR1-1:1

14

−3.07

5.99E-03

lnc-LRR1-1:4

14

−3.10

5.70E-03

lnc-TRIM59-2:1

3

−3.19

7.10E-04

lnc-CRKL-2:1

22

−3.22

3.83E-02

lnc-TSPY10-14:1

Y

−3.29

2.12E-03

lnc-NEK8-2:1

17

−3.33

8.39E-03

SNHG19:3

16

−3.36

1.54E-03

lnc-GCNT1-4:1

9

−3.38

7.74E-03

lnc-ZNF169-7:2

9

−3.49

4.90E-03

lnc-CFH-2:1

1

−3.52

3.31E-03

lnc-AC106017.1.1-2:2

17

−3.53

2.10E-03

lnc-HNRNPA2B1-10:4

7

−3.57

6.41E-03

lnc-MINA-3:5

3

−3.63

2.18E-02

lnc-HEPH-1:1

X

−3.70

1.28E-02

lnc-AUTS2-6:1

7

−3.72

2.54E-04

lnc-GPR39-10:3

2

−3.79

2.22E-04

lnc-KNG1-2:8

3

−3.80

7.11E-03

SNHG5:47

6

−3.83

1.35E-03

SNHG5:5

6

−3.83

1.35E-03

lnc-TTLL10-3:9

1

−3.88

1.04E-02

lnc-GPR39-7:1

2

−3.91

6.00E-04

lnc-FGG-2:1

4

−3.97

1.01E-03

SNHG22:3

18

−4.08

2.79E-03

lnc-KLK1-2:3

19

−4.24

5.23E-03

lnc-DUOX1-2:1

15

−4.38

4.95E-02

lnc-CTD-2144E22.5.1-19:1

16

−4.39

5.42E-03

lnc-DUOXA1-1:1

15

−4.44

4.91E-02

lnc-COL4A5-3:1

X

−4.50

2.74E-02

lnc-C19orf57-6:5

19

−4.51

3.02E-03

lnc-C11orf54-1:1

11

−4.55

1.20E-03

MIR17HG:6

13

−4.58

2.26E-03

lnc-KIF2C-2:1

1

−4.65

1.27E-03

ZFAS1:23

20

−4.80

1.49E-03

GAS5:68

1

−4.82

1.03E-03

lnc-GPR39-10:2

2

−4.89

8.14E-05

lnc-FLOT2-1:1

17

−4.95

1.70E-02

lnc-AL669831.1-14:1

1

−4.99

2.43E-04

lnc-VSTM5-1:13

11

−5.01

3.83E-03

lnc-TPTE-3:9

21

−5.16

7.51E-03

DNM3OS:3

1

−5.18

2.18E-03

lnc-AL669831.1-12:2

1

−5.19

1.30E-04

lnc-MSH3-2:1

5

−5.54

1.78E-02

lnc-VSTM5-1:10

11

−5.73

1.71E-02

lnc-AUTS2-6:2

7

−5.75

7.10E-04

lnc-AFP-3:1

4

−5.79

4.31E-05

lnc-HAUS5-3:2

19

−5.89

1.21E-03

lnc-HAUS5-3:1

19

−5.90

1.23E-03

SNHG8:14

4

−6.16

1.01E-02

lnc-AK3-1:1

9

−6.43

2.40E-03

lnc-ZBTB37-2:1

1

−6.45

4.27E-03

lnc-AC006156.1-11:1

Y

−6.46

7.10E-04

lnc-AFP-1:2

4

−6.56

5.13E-05

lnc-MYO16-7:1

13

−6.62

5.66E-04

lnc-SLC3A2-6:1

11

−6.69

6.61E-03

lnc-RABGGTB-1:6

1

−6.84

5.72E-04

SNHG1:25

11

−7.00

1.37E-02

lnc-AC007952.2.1-2:2

17

−7.51

1.91E-03

lnc-MOS-1:2

8

−7.79

6.47E-04

LINC01138:11

1

−7.81

1.59E-04

MIR503HG:16

X

−7.92

1.14E-03

lnc-APAF1-3:1

12

−7.99

4.93E-04

MIR17HG:5

13

−8.00

1.03E-03

MIR503HG:17

X

−8.05

1.02E-03

MIR99AHG:50

21

−8.35

1.50E-04

MIR99AHG:51

21

−8.35

1.47E-04

MIR99AHG:42

21

−8.35

1.54E-04

MIR99AHG:63

21

−8.37

1.50E-04

lnc-SPG7-2:3

16

−8.44

4.74E-04

lnc-ERAL1-1:1

17

−10.17

2.29E-03

lnc-SNAPC5-4:1

15

−10.33

3.18E-04

lnc-SNAPC5-4:2

15

−10.49

2.79E-04

SNHG1:1

11

−10.64

6.00E-04

lnc-SNURF-1:2

15

−10.67

1.22E-02

SNHG1:12

11

−10.79

1.50E-02

lnc-AFP-2:1

4

−11.47

1.18E-05

SNHG1:59

11

−13.06

7.36E-04

LRRC75A-AS1:49

17

−14.14

4.71E-04

lnc-RPL17-2:4

18

−14.76

2.66E-04

LINC00910:1

17

−14.92

1.14E-03

LINC00910:16

17

−15.01

1.14E-03

lnc-VSTM5-1:7

11

−17.05

3.53E-04

LRRC75A-AS1:41

17

−17.68

7.08E-04

lnc-MINA-3:4

3

−19.80

1.50E-04

lnc-SNURF-1:92

15

−20.18

6.06E-05

lnc-SNURF-1:95

15

−20.18

6.18E-05

lnc-TPTE-3:5

21

−20.61

1.72E-03

GAS5:43

1

−24.86

1.26E-05

lnc-ARHGEF6-4:1

X

−28.38

1.37E-06

LRRC75A-AS1:36

17

−31.63

4.59E-05

lnc-NEDD4L-1:6

18

−32.06

1.18E-05

lnc-CCNB1IP1-1:2

14

−34.31

2.78E-03

GAS5:41

1

−43.46

1.41E-03

lnc-TMEM132C-11:1

12

−67.46

6.92E-04

SNHG6:15

8

−103.09

7.10E-04

lnc-HSD17B10-3:1

X

−146.51

2.70E-04

lnc-AC022098.1-1:10

19

−576.95

3.27E-05

SNHG1:60

11

−693.84

4.85E-06

GAS5:7

1

−814.77

1.19E-05

GAS5:72

1

−814.77

1.19E-05

LINC01021:16

5

−1317.35

9.16E-06

lnc-MBNL2-3:1

13

−4157.50

9.10E-07

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