Table 1 Summary of RNA expression data sets used in this analysis.

From: Brain Cell Type Specific Gene Expression and Co-expression Network Architectures

Data Set

Species

Data Type

GEO accession

# AST

# END

# MIC

# NEU

# MOL

# OPC

Covariates

Darmanis

Human

Single-cell

GSE67835

62

20

16

131

38

18

Total Features

Zhang (2016)

Human

Cell population

GSE73721

12

2

3

1

5

—

—

Zhang (2015)

Mouse

Cell population

GSE52564

2

2

2

2

2

2

—

Zeisel

Mouse

Single-cell

GSE60361

129

137

33

1519

484

—

Total Features, Tissue, Age

Tasic

Mouse

Single-cell

GSE71585

50

21

22

1465

42

24

Total Features

  1. The sample size for each cell type, as well as the covariates included in the differential expression model, for each of the data sets used in this meta-analysis. Note that these numbers are calculated subsequent to cleaning and combining of cell populations originally annotated in each of the data sets, as described in the Methods. A dash indicates that a cell type was not present in that data set. AST = astrocyte, END = endothelial cell, MIC = microglia, NEU = neuron, MOL = mature oligodendrocyte, OPC = oligodendrocyte precursor cell.
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