Table 1 Self-attribution of C. jejuni isolates from 4 putative sources of human infections using molecular data from CGF40, MLST or WGS using 15 host-segregating markers (HS markers).

From: Ruminant and chicken: important sources of campylobacteriosis in France despite a variation of source attribution in 2009 and 2015

 

CGF40

MLST

WGS (15 HS markers)

Chicken

Ruminant

Environment

Pets

Chicken

Ruminant

Environment

Pets

Chicken

Ruminant

Environment

Pets

Chicken

0.49 (0.42–0.55)

0.23 (0.17–0.29)

0.27 (0.21–0.34)

0.01 (−0.01–0.03)

0.37 (0.29–0.46)

0.27 (0.19–0.34)

0.18 (0.10–0.26)

0.18 (0.12–0.24)

0.57 (0.52–0.62)

0.11 (0.06–0.16)

0.12 (0.03–0.21)

0.20 (0.11–0.30)

Ruminant

0.19 (0.10–0.28)

0.40 (0.33–0.47)

0.14 (0.06–0.23)

0.26 (0.19–0.34)

0.11 (0.05–0.17)

0.66 (0.59–0.73)

0.08 (0.03–0.13)

0.15 (0.06–0.23)

0.28 (0.21–0.34)

0.57 (0.52–0.63)

0.06 (0.02–0.11)

0.09 (0.04–0.14)

Environment

0.24 (0.17–0.30)

0.00 (0.00–0.00)

0.76 (0.70–0.83)

0.00 (0.00–0.00)

0.08 (0.04–0.13)

0.01 (0.00–0.01)

0.53 (0.45–0.61)

0.38 (0.30–0.45)

0.20 (0.07–0.33)

0.05 (0.02–0.07)

0.38 (0.31–0.45)

0.37 (0.28–0.47)

Pets

0.38 (0.32–0.45)

0.05 (0.03–0.08)

0.56 (0.49–0.63)

0.0 (0.0–0.0)

0.33 (0.28–0.37)

0.25 (0.22–0.27)

0.16 (0.05–0.27)

0.27 (0.14–0.40)

0.32 (0.22–0.41)

0.11 (0.07–0.17)

0.30 (0.22–0.38)

0.27 (0.17–0.37)

  1. Host populations in bold letters are populations for which isoaltes were tested in self-attribution tests. Self-attribution probabilities for a same host population are presented in line.
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