Table 1 Top 10 miRNAs with previously reported development-associated functions.

From: Comparison of multi-lineage differentiation of hiPSCs reveals novel miRNAs that regulate lineage specification

miRNAs

Expression pattern

Reported functions in lineages

miR-10a-5p

HD 10 (up)

Liver fibrosis62

miR-122-5p

HD 6-10 (up)

Expressed in developing liver tissue63/Liver-specific miRNA and maintenance of adult-liver phenotype35,36/Cholesterol and lipid metabolism36,64

miR-124-3p

HD 3–10 (down)

Cholangiocyte proliferation65/Brain-specific miRNA65,66

miR-146b-5p

HD 10 (up)

Intestinal epithelial cell differentiation67/Visceral preadipocyte proliferation and differentiation68/Regulator of inflammation in epithelial cells, lung fibroblasts and others69

miR-184

HD 10 (up)

miR-192-5p/194-3p

HD 6–10 (up)

Liver-abundant miRNAs70/Intestinal epithelial cell differentiation71

miR-489-3p

HD 3 (enriched)

Increased in all germ layers, highest in the endoderm11

miR-517a-3p/-526b-5p

HD 3–10 (down)

Members of C19MC cluster, which is involved in pluripotent stem cell status72,73

miR-10a-5p

KD 6 (enriched)

Biomarkers of kidney injury74

miR-10b-5p

KD 6 (enriched)

miR-181a-5p

KD 10 (up)

Expressed in kidney tissue75/Hematopoietic lineage differentiation75

miR-214–3p

KD 10 (up)

Differentiation of ESCs into endothelial cells76/Osteogenic differentiation77

miR-302a-5p/3p/-302c-5p/-302d-5p

KD 10 (down)

hPSC-specific miRNAs22/Definitive endoderm formation12

miR-371a-3p

KD 10 (down)

hPSC-specific miRNAs22/Mesendoderm specification78

let-7e-5p

KD 10 (up)

Early nephrogenic differentiation38

miR-10a-5p

ND 10 (up)

Neuron differentiation79

miR-181a-2-3p

ND 3 (down)

Regulation of synaptic functions80

miR-1208

ND 6 (enriched)

miR-375

ND 6–10 (up)

Inhibition of neurite differentiation81/Spinal motor neuron development82

miR-4470

ND 3–6 (up)

miR-520a-5p/-520g-3p/-526b-5p

ND 3–10 (down)

Members of C19MC cluster, which is involved in pluripotent stem cell status72,73

miR-664b-5p

ND 3–10 (up)

miR-934

ND 6–10 (up)