Table 3 PSRSM, DeepCNF, SPIDER3, MUFOLD,PSIPRED and JPRED average Q3 accuracies and Q3 accuracies in the internal regions, and at boundary regions of secondary structures on the T100.

From: Protein Secondary Structure Prediction Based on Data Partition and Semi-Random Subspace Method

Method

Q3(average)

Q3 (internal)

Q3 (boundary)

Website

DeepCNF

82.78

85.68

73.30

http://raptorx.uchicago.edu/StructurePropertyPred/predict/

SPIDER3

82.41

88.25

70.72

http://sparks-lab.org/server/SPIDER3/

MUFOLD

84.35

89.28

74.65

http://mufold.org/mufold-ss-angle/

PSIPRED

76.33

82.84

63.06

http://bioinf.cs.ucl.ac.uk/psipred/

JPRED

74.45

81.42

60.25

http://www.compbio.dundee.ac.uk/jpred4/index.html

PSRSM

85.09

89.89

75.33

http://210.44.144.20:82/protein_PSRSM/default.aspx

  1. The DeepCNF method is available only to proteins with a length of [26, 4000], MUFOLD is [30,700], and JPRED is [20,800].
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