Table 1 Main descriptive statistics related to fennel genome and transcriptome assemblies.

From: The leaf transcriptome of fennel (Foeniculum vulgare Mill.) enables characterization of the t-anethole pathway and the discovery of microsatellites and single-nucleotide variants

Main Statistics

Genome

Transcriptome

De novo

Genome-guided

Clustering

Total sequences

300,408

61,299

51,917

79,263

Total bases

1,011,093,015

57,419,229

68,310,969

90,513,363

Min sequence length

370

104

200

115

Max sequence length

145,787

14,975

13,065

14,975

Average sequence length

3365.73

936.71

1,315.77

1,141.94

Median sequence length

1241.00

627

1,073

824

N25 length

20734

2,313

2,681

2,545

N50 length

9443

1,353

1,850

1,654

N75 length

2842

705

1,162

936

N90 length

1126

425

684

535

N95 length

777

333

471

396

As %

31.81

31.39

29.61

30.62

Ts %

31.72

29.68

30.13

30.06

Gs %

16.06

18.31

21.28

19.76

Cs %

16.11

20.61

18.62

19.3

(A + T)s %

63.53

61.08

59.74

60.68

(G + C)s %

32.17

38.92

39.89

39.06

Ns %

4.30

0

0.37

0.26

  1. Statistics are available for the genome draft, de novo transcriptome assembly, the genome-guided transcriptome assembly and the clustered transcriptome assembly.
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